RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 PARD6AQ9NPB6 346 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 SEMA4GQ9NTN9 838 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 HCN3Q9P1Z3 774 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 ENTPD4Q9Y227 616 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 SPACA6W5XKT8 324 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 EP300Q09472 2414 aaPredicted RBP13.42□□□□□ -0.26
USP39-220ENST00000613444 MUC6Q6W4X9 2439 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 RNF103-CHMP3A0A140T963 221 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 H0Y3Z8 333 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 HYAL3O43820 417 aaPredicted RBP13.42□□□□□ -0.26
USP39-220ENST00000613444 FGF17O60258 216 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 NUDT7P0C024 238 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 TGM1P22735 817 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 PDX1P52945 283 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 SKP1P63208 163 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 FOLH1Q04609 750 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 ZFP36L1Q07352 338 aaKnown RBP13.42□□□□□ -0.26
USP39-220ENST00000613444 SYT16Q17RD7 645 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 CPZQ66K79 652 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 TLDC1Q6P9B6 456 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 AAGABQ6PD74 315 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 RNF111Q6ZNA4 994 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 B3GNT8Q7Z7M8 397 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 SPPL2CQ8IUH8 684 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 OR4N5Q8IXE1 308 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 ZZZ3Q8IYH5 903 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 MICU2Q8IYU8 434 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 METTL27Q8N6F8 245 aaPredicted RBP13.42□□□□□ -0.26
USP39-220ENST00000613444 OR4K14Q8NGD5 310 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 OR52N2Q8NGI0 321 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 STMN2Q93045 179 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 ANKRD9Q96BM1 317 aaPredicted RBP13.42□□□□□ -0.26
USP39-220ENST00000613444 NEURL3Q96EH8 262 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 MVB12AQ96EY5 273 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 MMABQ96EY8 250 aaPredicted RBP13.42□□□□□ -0.26
USP39-220ENST00000613444 FTSJ1Q9UET6 329 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 SERTAD3Q9UJW9 196 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 SNX8Q9Y5X2 465 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 ZNF780BQ9Y6R6 833 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 NUP210LQ5VU65 1888 aa13.42□□□□□ -0.26
USP39-220ENST00000613444 TCRBV5S2A0A599 114 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 LDB3O75112 727 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 FKBP6O75344 327 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 TNFRSF21O75509 655 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 MPIP34949 423 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 SOAT1P35610 550 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 AVPR1BP47901 424 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 XKP51811 444 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 MRPS22P82650 360 aaKnown RBP13.41□□□□□ -0.26
USP39-220ENST00000613444 RHDQ02161 417 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 SPIDRQ14159 915 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 RCN1Q15293 331 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 GLYATQ6IB77 296 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 TTLL10Q6ZVT0 673 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 NAXDQ8IW45 347 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 ZFP28Q8NHY6 868 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 TANKQ92844 425 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 DHCR7Q9UBM7 475 aaKnown RBP13.41□□□□□ -0.26
USP39-220ENST00000613444 BCAP29Q9UHQ4 241 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 MAGEL2Q9UJ55 1249 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 CORO2BQ9UQ03 480 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 CLDN16Q9Y5I7 305 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 AQP12BA6NM10 295 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 GPR75O95800 540 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 LMNAP02545 664 aaKnown RBP13.41□□□□□ -0.26
USP39-220ENST00000613444 RNH1P13489 461 aaKnown RBP13.41□□□□□ -0.26
USP39-220ENST00000613444 CASP9P55211 416 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 ACY1Q03154 408 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 VAC14Q08AM6 782 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 LTB4RQ15722 352 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 CSRP2Q16527 193 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 TMEM64Q6YI46 380 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 SPATA24Q86W54 205 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 PROSER1Q86XN7 944 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 RNF130Q86XS8 419 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 AQP12AQ8IXF9 295 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 GPR135Q8IZ08 494 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 LRRC25Q8N386 305 aaPredicted RBP13.41□□□□□ -0.26
USP39-220ENST00000613444 OR9A2Q8NGT5 310 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 SLCO4A1Q96BD0 722 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 DUS3LQ96G46 650 aaKnown RBP13.41□□□□□ -0.26
USP39-220ENST00000613444 PEX11GQ96HA9 241 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 GORASP2Q9H8Y8 452 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 TMEM9BQ9NQ34 198 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 GIMAP4Q9NUV9 329 aa13.41□□□□□ -0.26
USP39-220ENST00000613444 STX18Q9P2W9 335 aaKnown RBP13.41□□□□□ -0.26
USP39-220ENST00000613444 KRT75O95678 551 aa13.4□□□□□ -0.26
USP39-220ENST00000613444 BMP2P12643 396 aa13.4□□□□□ -0.26
USP39-220ENST00000613444 ETFAP13804 333 aa13.4□□□□□ -0.26
USP39-220ENST00000613444 CPMP14384 443 aa13.4□□□□□ -0.26
USP39-220ENST00000613444 CHI3L1P36222 383 aaPredicted RBP13.4□□□□□ -0.26
USP39-220ENST00000613444 CCT3P49368 545 aaKnown RBP13.4□□□□□ -0.26
USP39-220ENST00000613444 ID2Q02363 134 aa13.4□□□□□ -0.26
USP39-220ENST00000613444 CYP51A1Q16850 503 aa13.4□□□□□ -0.26
USP39-220ENST00000613444 YOD1Q5VVQ6 348 aaPredicted RBP13.4□□□□□ -0.26
USP39-220ENST00000613444 SAMD14Q8IZD0 417 aaPredicted RBP13.4□□□□□ -0.26
USP39-220ENST00000613444 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.4□□□□□ -0.26
USP39-220ENST00000613444 TBC1D20Q96BZ9 403 aa13.4□□□□□ -0.26
USP39-220ENST00000613444 OR6C1Q96RD1 312 aa13.4□□□□□ -0.26
USP39-220ENST00000613444 PRRX2Q99811 253 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms