RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 PLD2O14939 933 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 GMNNO75496 209 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 PRKRAO75569 313 aaKnown RBP14.34□□□□□ -0.11
TRIM28-209ENST00000597423 DKK1O94907 266 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 ALBP02768 609 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 NTRK1P04629 796 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 GSNP06396 782 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 SLC35E2P0CK97 266 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 CPMP14384 443 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 ME2P23368 584 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 CHI3L1P36222 383 aaPredicted RBP14.34□□□□□ -0.11
TRIM28-209ENST00000597423 MAGEA8P43361 318 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 ANXA11P50995 505 aaKnown RBP14.34□□□□□ -0.11
TRIM28-209ENST00000597423 SLC7A2P52569 658 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 EEFSECP57772 596 aaKnown RBP14.34□□□□□ -0.11
TRIM28-209ENST00000597423 HBA1P69905 142 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 FOLH1Q04609 750 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 DMTNQ08495 405 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 HSPB3Q12988 150 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 MAP7Q14244 749 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 CEBPEQ15744 281 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 MPEG1Q2M385 716 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 SLC15A3Q8IY34 581 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 ULK2Q8IYT8 1036 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 PSMA8Q8TAA3 256 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 UCN3Q969E3 161 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 TMEM125Q96AQ2 219 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 CNRIP1Q96F85 164 aaPredicted RBP14.34□□□□□ -0.11
TRIM28-209ENST00000597423 CTRCQ99895 268 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 B3GNT4Q9C0J1 378 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 TGIF2Q9GZN2 237 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 GLIPR2Q9H4G4 154 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 VAPAQ9P0L0 249 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 GPN3Q9UHW5 284 aaPredicted RBP14.34□□□□□ -0.11
TRIM28-209ENST00000597423 GMEB1Q9Y692 573 aa14.34□□□□□ -0.11
TRIM28-209ENST00000597423 ANKRD65E5RJM6 399 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 H0YHG0 523 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 FXYD1O00168 92 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 SLC30A4O14863 429 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 DYRK3O43781 588 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 OR10H2O60403 315 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 GFRA3O60609 400 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 CCNYL3P0C7X3 344 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 C8orf89P0DMQ9 161 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 EFNA1P20827 205 aaPredicted RBP14.33□□□□□ -0.12
TRIM28-209ENST00000597423 SOAT1P35610 550 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 CDKN2CP42773 168 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 MAPK10P53779 464 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 KCNJ2P63252 427 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 TXNL4AP83876 142 aaKnown RBP14.33□□□□□ -0.12
TRIM28-209ENST00000597423 PRR5P85299 388 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 VAC14Q08AM6 782 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 PRSS53Q2L4Q9 553 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 MFSD4BQ5TF39 518 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 DNAJC14Q6Y2X3 702 aaPredicted RBP14.33□□□□□ -0.12
TRIM28-209ENST00000597423 TMEM64Q6YI46 380 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 OVCH1Q7RTY7 1134 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 ZNF551Q7Z340 670 aaPredicted RBP14.33□□□□□ -0.12
TRIM28-209ENST00000597423 GALNT15Q8N3T1 639 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 ANKRD9Q96BM1 317 aaPredicted RBP14.33□□□□□ -0.12
TRIM28-209ENST00000597423 SLC39A3Q9BRY0 314 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 SLC35A5Q9BS91 424 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 ULBP3Q9BZM4 244 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 TPT1P8Q9HAU6 139 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 APMAPQ9HDC9 416 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 C14orf105Q9NVL8 296 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 IFT80Q9P2H3 777 aaPredicted RBP14.33□□□□□ -0.12
TRIM28-209ENST00000597423 ABCD2Q9UBJ2 740 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 CDV3Q9UKY7 258 aaKnown RBP14.33□□□□□ -0.12
TRIM28-209ENST00000597423 PCDHGA3Q9Y5H0 932 aa14.33□□□□□ -0.12
TRIM28-209ENST00000597423 TRBV5-3A0A0A0MS03 114 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 WASHC1A8K0Z3 465 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 C9J4A7 227 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 TM4SF5O14894 197 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 LDB3O75112 727 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 ATP1B1P05026 303 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 IFI6P09912 130 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 NT5EP21589 574 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 GALNSP34059 522 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 CCT3P49368 545 aaKnown RBP14.32□□□□□ -0.12
TRIM28-209ENST00000597423 NOVA1P51513 510 aaKnown RBP14.32□□□□□ -0.12
TRIM28-209ENST00000597423 CORO7P57737 925 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 SYT16Q17RD7 645 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 PIGGQ5H8A4 983 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 PGM2L1Q6PCE3 622 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 QSOX2Q6ZRP7 698 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 OR4N5Q8IXE1 308 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 OR56A1Q8NGH5 318 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 SFXN5Q8TD22 340 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.32□□□□□ -0.12
TRIM28-209ENST00000597423 FKBP10Q96AY3 582 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 ZNF578Q96N58 590 aaPredicted RBP14.32□□□□□ -0.12
TRIM28-209ENST00000597423 PTCHD1Q96NR3 888 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 DGAT2Q96PD7 388 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 PHOX2BQ99453 314 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 CPPED1Q9BRF8 314 aaPredicted RBP14.32□□□□□ -0.12
TRIM28-209ENST00000597423 SPATA9Q9BWV2 254 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 ALOXE3Q9BYJ1 711 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 CMTM6Q9NX76 183 aa14.32□□□□□ -0.12
TRIM28-209ENST00000597423 THUMPD1Q9NXG2 353 aaKnown RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms