RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 PHF3Q92576 2039 aaKnown RBP12.09□□□□□ -0.47
LIG1-212ENST00000596549 CELSR2Q9HCU4 2923 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 ARHGAP10A1A4S6 786 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 PRSS44E7EML9 344 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 G3V3Y1 287 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 KLRC4-KLRK1H3BQV0 150 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 RHOXF2BP0C7M4 288 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 ALOX15P16050 662 aaPredicted RBP12.08□□□□□ -0.48
LIG1-212ENST00000596549 CDH13P55290 713 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 HERVK_113P63132 956 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 ERVK-8P63133 956 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 ADGRD1Q6QNK2 874 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 LYPD8Q6UX82 237 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 MRGPRGQ86SM5 289 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 ST13P4Q8IZP2 240 aaPredicted RBP12.08□□□□□ -0.48
LIG1-212ENST00000596549 ZNF808Q8N4W9 903 aaPredicted RBP12.08□□□□□ -0.48
LIG1-212ENST00000596549 OR2M7Q8NG81 312 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 OR52N2Q8NGI0 321 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 NUBPLQ8TB37 319 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 ATP6V1E2Q96A05 226 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 SENP5Q96HI0 755 aaPredicted RBP12.08□□□□□ -0.48
LIG1-212ENST00000596549 TMEM237Q96Q45 408 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 PHF12Q96QT6 1004 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 SERPINI1Q99574 410 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 RHOXF2Q9BQY4 288 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 ERVK-6Q9BXR3 956 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 TIMMDC1Q9NPL8 285 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 PLSCR2Q9NRY7 297 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 COPS7AQ9UBW8 275 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 ERVK-11Q9UQG0 969 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 ERVK-19Q9WJR5 959 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 MEMO1Q9Y316 297 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 CACNA1DQ01668 2161 aa12.08□□□□□ -0.48
LIG1-212ENST00000596549 ARHGAP21Q5T5U3 1957 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 A0A1B0GTH9 108 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 ADAM10O14672 748 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 CCL3P10147 92 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 COX7A2P14406 83 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 ABOP16442 354 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 HCFC1P51610 2035 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 GALNT1Q10472 559 aaPredicted RBP12.07□□□□□ -0.48
LIG1-212ENST00000596549 ASPHQ12797 758 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 EBPQ15125 230 aaKnown RBP12.07□□□□□ -0.48
LIG1-212ENST00000596549 ZNF750Q32MQ0 723 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 TCHHL1Q5QJ38 904 aaPredicted RBP12.07□□□□□ -0.48
LIG1-212ENST00000596549 OR52E8Q6IFG1 317 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 CYP20A1Q6UW02 462 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 RPTNQ6XPR3 784 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 C3P1Q6ZMU1 363 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 BNC2Q6ZN30 1099 aaPredicted RBP12.07□□□□□ -0.48
LIG1-212ENST00000596549 TIFABQ6ZNK6 161 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 TRMT10CQ7L0Y3 403 aaKnown RBP12.07□□□□□ -0.48
LIG1-212ENST00000596549 IFT20Q8IY31 132 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 AGAP11Q8TF27 550 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 TANKQ92844 425 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 DMRTA2Q96SC8 542 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 HBEGFQ99075 208 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 CNPPD1Q9BV87 410 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 TTTY12Q9BZ98 90 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 TRPS1Q9UHF7 1281 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 ENTPD4Q9Y227 616 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 LIPGQ9Y5X9 500 aa12.07□□□□□ -0.48
LIG1-212ENST00000596549 ZNF407Q9C0G0 2248 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 FAM166BA8MTA8 275 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 GOLGA8RI6L899 631 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 PGRMC2O15173 223 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 CDC40O60508 579 aaKnown RBP eCLIP12.06□□□□□ -0.48
LIG1-212ENST00000596549 OR4F21O95013 312 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 GPR75O95800 540 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 OTCP00480 354 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 PDYNP01213 254 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 CT62P0C5K7 136 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 PRF1P14222 555 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 TLX1P31314 330 aaPredicted RBP12.06□□□□□ -0.48
LIG1-212ENST00000596549 DNASE1L1P49184 302 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 CASP6P55212 293 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 SLC37A1P57057 533 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 CLCQ05315 142 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 TBL3Q12788 808 aaKnown RBP12.06□□□□□ -0.48
LIG1-212ENST00000596549 ART3Q13508 389 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 SLC29A2Q14542 456 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 MPEG1Q2M385 716 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 ZNF791Q3KP31 576 aaPredicted RBP12.06□□□□□ -0.48
LIG1-212ENST00000596549 UNC50Q53HI1 259 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 ZNF678Q5SXM1 525 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 TTC19Q6DKK2 380 aaPredicted RBP12.06□□□□□ -0.48
LIG1-212ENST00000596549 MTFR2Q6P444 385 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 RTL4Q6ZR62 310 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 MILR1Q7Z6M3 343 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 CD163Q86VB7 1156 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 DOLPP1Q86YN1 238 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 TICAM1Q8IUC6 712 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 MMP21Q8N119 569 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 METTL4Q8N3J2 472 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 GOLM1Q8NBJ4 401 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 MTBPQ96DY7 904 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 ART5Q96L15 291 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 PELOQ9BRX2 385 aaKnown RBP12.06□□□□□ -0.48
LIG1-212ENST00000596549 ZDHHC11Q9H8X9 412 aa12.06□□□□□ -0.48
LIG1-212ENST00000596549 SH2D2AQ9NP31 389 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms