RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SNX3O60493 162 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 KLHL41O60662 606 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 GPR75O95800 540 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 DDAH2O95865 285 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 CELA2AP08217 269 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 CT62P0C5K7 136 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 LAMP1P11279 417 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 PRPS2P11908 318 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 GPX3P22352 226 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 FOLR3P41439 243 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 GSTM5P46439 218 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 UFM1P61960 85 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 RPS15P62841 145 aaKnown RBP8.69□□□□□ -1.02
VPS35-211ENST00000569950 FOXK2Q01167 660 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 C2orf80Q0P641 193 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 CDC20Q12834 499 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 SSPNQ14714 243 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 MINDY4Q4G0A6 757 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 FHL5Q5TD97 284 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 FAAH2Q6GMR7 532 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 OR52E8Q6IFG1 317 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 SPATA19Q7Z5L4 167 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 TICAM1Q8IUC6 712 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 ZNF321PQ8N8H1 164 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 OR7A2PQ8NGA2 310 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 TANKQ92844 425 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 CTHRC1Q96CG8 243 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 COQ8BQ96D53 544 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 PTCHD1Q96NR3 888 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 CATSPER2Q96P56 530 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 SIKE1Q9BRV8 207 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 YIPF2Q9BWQ6 316 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 TRIM55Q9BYV6 548 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 ZNF700Q9H0M5 742 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 CLMPQ9H6B4 373 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 REEP4Q9H6H4 257 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 SEMA3GQ9NS98 782 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 NOP53Q9NZM5 478 aaKnown RBP8.69□□□□□ -1.02
VPS35-211ENST00000569950 KLHL14Q9P2G3 628 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 GPN3Q9UHW5 284 aaPredicted RBP8.69□□□□□ -1.02
VPS35-211ENST00000569950 COPG1Q9Y678 874 aaKnown RBP8.69□□□□□ -1.02
VPS35-211ENST00000569950 CACNA1BQ00975 2339 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 A0A0G2JND7 137 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 BLACEA4D250 179 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 K7ENP7 123 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 PSMD12O00232 456 aaPredicted RBP8.68□□□□□ -1.02
VPS35-211ENST00000569950 C1QCP02747 245 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 IGKV3-11P04433 115 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 HEXBP07686 556 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 C8orf89P0DMQ9 161 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 CPMP14384 443 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 HOXB9P17482 250 aaPredicted RBP8.68□□□□□ -1.02
VPS35-211ENST00000569950 JAK1P23458 1154 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 PTPN6P29350 595 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 BUD31P41223 144 aaPredicted RBP8.68□□□□□ -1.02
VPS35-211ENST00000569950 STT3AP46977 705 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 EEF1A2Q05639 463 aaKnown RBP8.68□□□□□ -1.02
VPS35-211ENST00000569950 LTB4RQ15722 352 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 NSDHLQ15738 373 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 SPRED3Q2MJR0 410 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 PDCD4Q53EL6 469 aaKnown RBP8.68□□□□□ -1.02
VPS35-211ENST00000569950 SFT2D3Q587I9 215 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 INO80CQ6PI98 192 aaPredicted RBP8.68□□□□□ -1.02
VPS35-211ENST00000569950 TMEM132CQ8N3T6 1108 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 CPSF7Q8N684 471 aaKnown RBP8.68□□□□□ -1.02
VPS35-211ENST00000569950 ZSCAN1Q8NBB4 408 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 APCDD1LQ8NCL9 501 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 DOK4Q8TEW6 326 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 PSMF1Q92530 271 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 CIDECQ96AQ7 238 aaPredicted RBP8.68□□□□□ -1.02
VPS35-211ENST00000569950 KIAA1143Q96AT1 154 aaPredicted RBP8.68□□□□□ -1.02
VPS35-211ENST00000569950 NACC2Q96BF6 587 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 PPWD1Q96BP3 646 aaKnown RBP8.68□□□□□ -1.02
VPS35-211ENST00000569950 TESCQ96BS2 214 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 NPAS2Q99743 824 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 ALOXE3Q9BYJ1 711 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 EPN3Q9H201 632 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 RABEP2Q9H5N1 569 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 CXorf21Q9HAI6 301 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 SERHLQ9NQF3 203 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 PFDN4Q9NQP4 134 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 SLC35C2Q9NQQ7 365 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 SIRT3Q9NTG7 399 aaPredicted RBP8.68□□□□□ -1.02
VPS35-211ENST00000569950 P4HTMQ9NXG6 502 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 ZNF639Q9UID6 485 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 ZMIZ1Q9ULJ6 1067 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 PADI2Q9Y2J8 665 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 EML6Q6ZMW3 1958 aa8.68□□□□□ -1.02
VPS35-211ENST00000569950 CDC14CA4D256 554 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 TMEM200CA6NKL6 621 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 UBDO15205 165 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 PRKNO60260 465 aaPredicted RBP8.67□□□□□ -1.02
VPS35-211ENST00000569950 MYO1DO94832 1006 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 SEC24DO94855 1032 aaPredicted RBP8.67□□□□□ -1.02
VPS35-211ENST00000569950 PSMG1O95456 288 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 ATP1B1P05026 303 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 CD63P08962 238 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 SLC35E2P0CK97 266 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 PRKAR1AP10644 381 aa8.67□□□□□ -1.02
VPS35-211ENST00000569950 IDO1P14902 403 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms