RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 DNLZQ5SXM8 178 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 LCN1P1Q5VSP4 162 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 DCAF12L1Q5VU92 463 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 IRAK1BP1Q5VVH5 260 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 GPR107Q5VW38 600 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 CYB5R2Q6BCY4 276 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 FRMPD2BQ6IN97 320 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 SLC30A6Q6NXT4 461 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 IL27RAQ6UWB1 636 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ISLR2Q6UXK2 745 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 DLEU7Q6UYE1 221 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 NAPRTQ6XQN6 538 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 FAM92BQ6ZTR7 304 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 COPS6Q7L5N1 327 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 SLC16A13Q7RTY0 426 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 PAGE2Q7Z2X7 111 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 SMIM15Q7Z3B0 74 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 TMCO2Q7Z6W1 182 aaPredicted RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 ADGRD2Q7Z7M1 963 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 TRIM69Q86WT6 500 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 DHFR2Q86XF0 187 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 FOXP4Q8IVH2 680 aaPredicted RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 SPAG16Q8N0X2 631 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 SIX6OS1Q8N1H7 587 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 STX19Q8N4C7 294 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 LRRC17Q8N6Y2 441 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 NANOGP1Q8N7R0 232 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ZNF781Q8N8C0 355 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 NECAB1Q8N987 351 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 WDSUB1Q8N9V3 476 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 TDRD5Q8NAT2 981 aaKnown RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 LINC00301Q8NCQ3 95 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ADPRHL1Q8NDY3 354 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 BBS1Q8NFJ9 593 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 BEST2Q8NFU1 509 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 KBTBD8Q8NFY9 601 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 OR10A7Q8NGE5 316 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 OR13F1Q8NGS4 319 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 IL31RAQ8NI17 732 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 BPIFB1Q8TDL5 484 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 TAS1R2Q8TE23 839 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 PHF10Q8WUB8 498 aaKnown RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 TMEM171Q8WVE6 324 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 DEDD2Q8WXF8 326 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 BRI3BPQ8WY22 251 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 C22orf15Q8WYQ4 148 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 DDB2Q92466 427 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 SLC7A6Q92536 515 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 HTRA1Q92743 480 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 RIT1Q92963 219 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 EXT2Q93063 718 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 PPWD1Q96BP3 646 aaKnown RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 AP2M1Q96CW1 435 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 LINGO1Q96FE5 620 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 C14orf144Q96I85 54 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 BTN2A3PQ96KV6 586 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 RNF145Q96MT1 663 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ZNF385AQ96PM9 386 aaKnown RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 TAAR1Q96RJ0 339 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 CYP2S1Q96SQ9 504 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ATP6V0BQ99437 205 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 LGMNQ99538 433 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 APOL4Q9BPW4 351 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 MAPKAP1Q9BPZ7 522 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 LBHD1Q9BQE6 289 aaPredicted RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 TMEM175Q9BSA9 504 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 NAT9Q9BTE0 207 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ACTR6Q9GZN1 396 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ROGDIQ9GZN7 287 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 CXorf36Q9H7Y0 433 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 DDX31Q9H8H2 851 aaKnown RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 ZFP14Q9HCL3 533 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.1□□□□□ -1.91
VPS35-208ENST00000568612 TRMT13Q9NUP7 481 aaKnown RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 MED9Q9NWA0 146 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 FAM120CQ9NX05 1096 aaKnown RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 SPHK1Q9NYA1 384 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 NINJ2Q9NZG7 142 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 AKAP7Q9P0M2 348 aaPredicted RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 COPZ2Q9P299 210 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 IFT80Q9P2H3 777 aaPredicted RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 SPASTQ9UBP0 616 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 MLXQ9UH92 298 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 CLEC2DQ9UHP7 191 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 FBXO5Q9UKT4 447 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 OGDHLQ9ULD0 1010 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ADAMTS5Q9UNA0 930 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 MAGED2Q9UNF1 606 aaPredicted RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 USP22Q9UPT9 525 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ERVW-1Q9UQF0 538 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 AAR2Q9Y312 384 aaKnown RBP3.1□□□□□ -1.91
VPS35-208ENST00000568612 STARD10Q9Y365 291 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 RNF11Q9Y3C5 154 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 PCDHGB6Q9Y5F9 930 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 PCDHGB2Q9Y5G2 931 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 PCDHGA5Q9Y5G8 931 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 ALG5Q9Y673 324 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 TMEM2Q9UHN6 1383 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 RIC1Q4ADV7 1423 aa3.1□□□□□ -1.91
VPS35-208ENST00000568612 TRPM2O94759 1503 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms