RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 FAIM2Q9BWQ8 316 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 PNO1Q9NRX1 252 aaKnown RBP16.15■□□□□ 0.18
CLN3-217ENST00000565354 ZDHHC2Q9UIJ5 367 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 MCM8Q9UJA3 840 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 RAP2CQ9Y3L5 183 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 ASB4Q9Y574 426 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 DNAJC15Q9Y5T4 150 aa16.15■□□□□ 0.18
CLN3-217ENST00000565354 TCRBV16S1A1N1A0A5B0 115 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 PIP5K1BO14986 540 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 LDB3O75112 727 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 SEC22BO75396 215 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 PRKRAO75569 313 aaKnown RBP16.14■□□□□ 0.17
CLN3-217ENST00000565354 AIFM1O95831 613 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 TNNI3P19429 210 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 TIA1P31483 386 aaKnown RBP eCLIP16.14■□□□□ 0.17
CLN3-217ENST00000565354 ARRB2P32121 409 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 TRA2BP62995 288 aaKnown RBP16.14■□□□□ 0.17
CLN3-217ENST00000565354 PPP2R2AP63151 447 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 ID2Q02363 134 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 BST1Q10588 318 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 RAPSNQ13702 412 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 SERTAD2Q14140 314 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 BTBD16Q32M84 506 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 C1QL3Q5VWW1 255 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 OR52E8Q6IFG1 317 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 KBTBD2Q8IY47 623 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 RBMXL3Q8N7X1 1067 aaKnown RBP16.14■□□□□ 0.17
CLN3-217ENST00000565354 ZNF781Q8N8C0 355 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 FDCSPQ8NFU4 85 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 RAB3IL1Q8TBN0 382 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 THOC3Q96J01 351 aaKnown RBP16.14■□□□□ 0.17
CLN3-217ENST00000565354 C5orf34Q96MH7 638 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 NUDT9Q9BW91 350 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 EBPLQ9BY08 206 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 ALOXE3Q9BYJ1 711 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 MANSC1Q9H8J5 431 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 LRTM1Q9HBL6 345 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 TEX10Q9NXF1 929 aaPredicted RBP16.14■□□□□ 0.17
CLN3-217ENST00000565354 GPR83Q9NYM4 423 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 SLC5A6Q9Y289 635 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.14■□□□□ 0.17
CLN3-217ENST00000565354 PTGDR2Q9Y5Y4 395 aa16.14■□□□□ 0.17
CLN3-217ENST00000565354 IGKV3D-11A0A0A0MRZ8 115 aa16.13■□□□□ 0.17
CLN3-217ENST00000565354 A0A1W2PQ72 361 aa16.13■□□□□ 0.17
CLN3-217ENST00000565354 A0A1W2PR48 441 aa16.13■□□□□ 0.17
CLN3-217ENST00000565354 GLOD5A6NK44 160 aa16.13■□□□□ 0.17
CLN3-217ENST00000565354 CBX6O95503 412 aa16.13■□□□□ 0.17
CLN3-217ENST00000565354 ANXA4P09525 319 aaPredicted RBP16.13■□□□□ 0.17
CLN3-217ENST00000565354 POU3F2P20265 443 aaPredicted RBP16.13■□□□□ 0.17
CLN3-217ENST00000565354 ALDH9A1P49189 494 aa16.13■□□□□ 0.17
CLN3-217ENST00000565354 EXT1Q16394 746 aa16.13■□□□□ 0.17
CLN3-217ENST00000565354 GALNTL6Q49A17 601 aa16.13■□□□□ 0.17
CLN3-217ENST00000565354 NDUFAF5Q5TEU4 345 aa16.13■□□□□ 0.17
CLN3-217ENST00000565354 RNF165Q6ZSG1 346 aa16.13■□□□□ 0.17
CLN3-217ENST00000565354 OR4N5Q8IXE1 308 aa16.13■□□□□ 0.17
CLN3-217ENST00000565354 C19orf60Q96EN9 201 aa16.13■□□□□ 0.17
CLN3-217ENST00000565354 DGAT2Q96PD7 388 aa16.13■□□□□ 0.17
CLN3-217ENST00000565354 LHPPQ9H008 270 aa16.13■□□□□ 0.17
CLN3-217ENST00000565354 ZNF395Q9H8N7 513 aaPredicted RBP16.13■□□□□ 0.17
CLN3-217ENST00000565354 ZNF446Q9NWS9 450 aa16.13■□□□□ 0.17
CLN3-217ENST00000565354 C1orf109Q9NX04 203 aa16.13■□□□□ 0.17
CLN3-217ENST00000565354 POLR3HQ9Y535 204 aaPredicted RBP16.13■□□□□ 0.17
CLN3-217ENST00000565354 PCSK5Q92824 1860 aa16.13■□□□□ 0.17
CLN3-217ENST00000565354 F8P00451 2351 aa16.12■□□□□ 0.17
CLN3-217ENST00000565354 MYOCOSA0A1B0GUC4 107 aa16.12■□□□□ 0.17
CLN3-217ENST00000565354 C1orf226A1L170 272 aa16.12■□□□□ 0.17
CLN3-217ENST00000565354 DYRK3O43781 588 aa16.12■□□□□ 0.17
CLN3-217ENST00000565354 FGF17O60258 216 aa16.12■□□□□ 0.17
CLN3-217ENST00000565354 ALPPP05187 535 aa16.12■□□□□ 0.17
CLN3-217ENST00000565354 COX7A2P14406 83 aa16.12■□□□□ 0.17
CLN3-217ENST00000565354 PIK3R1P27986 724 aa16.12■□□□□ 0.17
CLN3-217ENST00000565354 RPL14P50914 215 aaKnown RBP16.12■□□□□ 0.17
CLN3-217ENST00000565354 FOLH1Q04609 750 aa16.12■□□□□ 0.17
CLN3-217ENST00000565354 BIKQ13323 160 aa16.12■□□□□ 0.17
CLN3-217ENST00000565354 MYBPC3Q14896 1274 aa16.12■□□□□ 0.17
CLN3-217ENST00000565354 PDCD2Q16342 344 aaPredicted RBP16.12■□□□□ 0.17
CLN3-217ENST00000565354 CES4AQ5XG92 561 aa16.12■□□□□ 0.17
CLN3-217ENST00000565354 LRRC8CQ8TDW0 803 aa16.12■□□□□ 0.17
CLN3-217ENST00000565354 SNRNP40Q96DI7 357 aaKnown RBP16.12■□□□□ 0.17
CLN3-217ENST00000565354 METTL2AQ96IZ6 378 aaKnown RBP16.12■□□□□ 0.17
CLN3-217ENST00000565354 PHF12Q96QT6 1004 aa16.12■□□□□ 0.17
CLN3-217ENST00000565354 CCT7Q99832 543 aa16.12■□□□□ 0.17
CLN3-217ENST00000565354 TUBB1Q9H4B7 451 aa16.12■□□□□ 0.17
CLN3-217ENST00000565354 ADAP2Q9NPF8 381 aa16.12■□□□□ 0.17
CLN3-217ENST00000565354 THAP1Q9NVV9 213 aa16.12■□□□□ 0.17
CLN3-217ENST00000565354 SAGE2PA6NJ88 616 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 OR10H2O60403 315 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 SERPINA7P05543 415 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 GSTM5P46439 218 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 TAS2R50P59544 299 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 RPL38P63173 70 aaKnown RBP16.11■□□□□ 0.17
CLN3-217ENST00000565354 RAE1P78406 368 aaKnown RBP16.11■□□□□ 0.17
CLN3-217ENST00000565354 PLIN5Q00G26 463 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 ZNF763Q0D2J5 394 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 HEPACAMQ14CZ8 416 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 UGT3A2Q3SY77 523 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 C6orf163Q5TEZ5 329 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 PLAG1Q6DJT9 500 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 RIPOR1Q6ZS17 1223 aa16.11■□□□□ 0.17
CLN3-217ENST00000565354 TMEM132CQ8N3T6 1108 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms