RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 RNF103-CHMP3A0A140T963 221 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 NDUFAF8A1L188 74 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 ARHGAP42A6NI28 874 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 NME2P1O60361 137 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 CSDE1O75534 798 aaKnown RBP3.9□□□□□ -1.78
LINC00560-201ENST00000564593 ANXA9O76027 345 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 ADORA3P0DMS8 318 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 DPEP1P16444 411 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 FCARP24071 287 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 SFNP31947 248 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 ID1P41134 155 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 TNFRSF4P43489 277 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 ZFP36L2P47974 494 aaKnown RBP3.9□□□□□ -1.78
LINC00560-201ENST00000564593 LIMK2P53671 638 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 PEX3P56589 373 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 RPL27P61353 136 aaKnown RBP3.9□□□□□ -1.78
LINC00560-201ENST00000564593 RIGQ13278 110 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 CARTPTQ16568 116 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 MS4A18Q3C1V0 323 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 CCDC40Q4G0X9 1142 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 GPAT3Q53EU6 434 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 PARP10Q53GL7 1025 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 C1orf189Q5VU69 101 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 C1orf186Q6ZWK4 172 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 ZSCAN30Q86W11 494 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 KCNMB4Q86W47 210 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 PARP8Q8N3A8 854 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 SPPL2AQ8TCT8 520 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 RUNDC3BQ96NL0 473 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 TNFRSF13CQ96RJ3 184 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 IWS1Q96ST2 819 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 SPAG8Q99932 426 aaPredicted RBP3.9□□□□□ -1.78
LINC00560-201ENST00000564593 TRIM51Q9BSJ1 452 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 WDR41Q9HAD4 459 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 NMUR1Q9HB89 426 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 VPS54Q9P1Q0 977 aa3.9□□□□□ -1.78
LINC00560-201ENST00000564593 THAP10Q9P2Z0 257 aaPredicted RBP3.9□□□□□ -1.78
LINC00560-201ENST00000564593 DIMT1Q9UNQ2 313 aaKnown RBP3.9□□□□□ -1.78
LINC00560-201ENST00000564593 GCC2Q8IWJ2 1684 aa3.9□□□□□ -1.79
LINC00560-201ENST00000564593 DHX57Q6P158 1386 aaKnown RBP3.9□□□□□ -1.79
LINC00560-201ENST00000564593 KIF7Q2M1P5 1343 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 IGHV4-30-2A0A087WSY4 118 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 ASB14A6NK59 587 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 H7C423 109 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 ZNF749O43361 778 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 PGK2P07205 417 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 FHP07954 510 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 ACADSBP45954 432 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 SSTP61278 116 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 ERVK11-1P61568 191 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 RPS27AP62979 156 aaKnown RBP3.89□□□□□ -1.79
LINC00560-201ENST00000564593 EXOSC7Q15024 291 aaKnown RBP3.89□□□□□ -1.79
LINC00560-201ENST00000564593 P2RY14Q15391 338 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 ECSCRQ19T08 205 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 C14orf177Q52M58 125 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 TAF1BQ53T94 588 aaPredicted RBP3.89□□□□□ -1.79
LINC00560-201ENST00000564593 C2CD6Q53TS8 623 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 CMPK2Q5EBM0 449 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 DCAF12Q5T6F0 453 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 HIST2H2AA3Q6FI13 130 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 OR6B2Q6IFH4 312 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 ZNF613Q6PF04 617 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 MFSD7Q6UXD7 560 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 WDR88Q6ZMY6 472 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 Q6ZRG5 221 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 MCM10Q7L590 875 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 TAF8Q7Z7C8 310 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 PCNPQ8WW12 178 aaKnown RBP3.89□□□□□ -1.79
LINC00560-201ENST00000564593 C11orf52Q96A22 123 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 ESAMQ96AP7 390 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 C18orf12Q96KH6 178 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 NSMCE2Q96MF7 247 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 ERVK-18Q9QC07 812 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 IQGAP2Q13576 1575 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 SETD5Q9C0A6 1442 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 ITSN2Q9NZM3 1697 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 CFAP73A6NFT4 308 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 NEDD8-MDP1E9PL57 170 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 SOCS3O14543 225 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 DCXO43602 365 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 HIST1H2AGP0C0S8 130 aaPredicted RBP3.89□□□□□ -1.79
LINC00560-201ENST00000564593 MBL2P11226 248 aaPredicted RBP3.89□□□□□ -1.79
LINC00560-201ENST00000564593 MAPK3P27361 379 aaPredicted RBP3.89□□□□□ -1.79
LINC00560-201ENST00000564593 PPP2R1AP30153 589 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 FKBP3Q00688 224 aaKnown RBP3.89□□□□□ -1.79
LINC00560-201ENST00000564593 IL1RL1Q01638 556 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 SLC17A1Q14916 467 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 ZNF146Q15072 292 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 HERC4Q5GLZ8 1057 aaPredicted RBP3.89□□□□□ -1.79
LINC00560-201ENST00000564593 FAAP20Q6NZ36 180 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 CDC42EP5Q6NZY7 148 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 NEK5Q6P3R8 708 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 ZNF497Q6ZNH5 498 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 ITIH5Q86UX2 942 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.89□□□□□ -1.79
LINC00560-201ENST00000564593 GVQW1Q8N7I0 195 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 PRSS33Q8NF86 280 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 HIST1H2ACQ93077 130 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 TMEM186Q96B77 213 aa3.89□□□□□ -1.79
LINC00560-201ENST00000564593 COQ7Q99807 217 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms