RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 TCRBV16S1A1N1A0A5B0 115 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 DYTNA2CJ06 578 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 SCAMP2O15127 329 aaKnown RBP8.66□□□□□ -1.02
LDLR-210ENST00000559340 PGRMC2O15173 223 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 SNX3O60493 162 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 LDB3O75112 727 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 CNOT3O75175 753 aaKnown RBP8.66□□□□□ -1.02
LDLR-210ENST00000559340 JRKO75564 520 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 SLC22A3O75751 556 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 BCAS2O75934 225 aaPredicted RBP8.66□□□□□ -1.02
LDLR-210ENST00000559340 LRATO95237 230 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 FAM107AO95990 144 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 IL6P05231 212 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 UMODP07911 640 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 ALDOCP09972 364 aaKnown RBP8.66□□□□□ -1.02
LDLR-210ENST00000559340 CPMP14384 443 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 TACR1P25103 407 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 S100A3P33764 101 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 STT3AP46977 705 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 DIO3P55073 304 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 BTG2P78543 158 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 IGLV3-21P80748 117 aaPredicted RBP8.66□□□□□ -1.02
LDLR-210ENST00000559340 FOLH1Q04609 750 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 TERF2Q15554 542 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 ELAVL1Q15717 326 aaKnown RBP8.66□□□□□ -1.02
LDLR-210ENST00000559340 GKAP1Q5VSY0 366 aaPredicted RBP8.66□□□□□ -1.02
LDLR-210ENST00000559340 SHISA6Q6ZSJ9 500 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 NDUFAF7Q7L592 441 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 VASH2Q86V25 355 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 TICAM1Q8IUC6 712 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 TMEM151BQ8IW70 566 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 SPACA3Q8IXA5 215 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 LRRC25Q8N386 305 aaPredicted RBP8.66□□□□□ -1.02
LDLR-210ENST00000559340 ANKS4BQ8N8V4 417 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 OR14A16Q8NHC5 309 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 GFM2Q969S9 779 aaKnown RBP8.66□□□□□ -1.02
LDLR-210ENST00000559340 EXOSC8Q96B26 276 aaKnown RBP8.66□□□□□ -1.02
LDLR-210ENST00000559340 ANKRD9Q96BM1 317 aaPredicted RBP8.66□□□□□ -1.02
LDLR-210ENST00000559340 TESCQ96BS2 214 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 COQ8BQ96D53 544 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 ZBED6CLQ96FA7 236 aaPredicted RBP8.66□□□□□ -1.02
LDLR-210ENST00000559340 EGLN2Q96KS0 407 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 TUBB6Q9BUF5 446 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 BHLHE41Q9C0J9 482 aaPredicted RBP8.66□□□□□ -1.02
LDLR-210ENST00000559340 SDR39U1Q9NRG7 319 aaPredicted RBP8.66□□□□□ -1.02
LDLR-210ENST00000559340 PNO1Q9NRX1 252 aaKnown RBP8.66□□□□□ -1.02
LDLR-210ENST00000559340 ACSS1Q9NUB1 689 aaPredicted RBP8.66□□□□□ -1.02
LDLR-210ENST00000559340 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.66□□□□□ -1.022e-6■■■□□ 16.1
LDLR-210ENST00000559340 HEY2Q9UBP5 337 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 CES1P1Q9UKY3 287 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 G3BP2Q9UN86 482 aaKnown RBP8.66□□□□□ -1.02
LDLR-210ENST00000559340 POLHQ9Y253 713 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 ARL2BPQ9Y2Y0 163 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 CLCA3PQ9Y6N3 262 aa8.66□□□□□ -1.02
LDLR-210ENST00000559340 ZFYVE26Q68DK2 2539 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 PTPRQQ9UMZ3 2332 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 IGKV3D-11A0A0A0MRZ8 115 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 FAM234BA2RU67 622 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 CDC14CA4D256 554 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 GLOD5A6NK44 160 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 GABRR3A8MPY1 467 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 SLC22A2O15244 555 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 CFLARO15519 480 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 PDPK1O15530 556 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 EFSO43281 561 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 FGF17O60258 216 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 DCTN3O75935 186 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 HPP00738 406 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 MAOAP21397 527 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 NT5EP21589 574 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 F8A1P23610 371 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 KIR3DL1P43629 444 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 POLR2JP52435 117 aaKnown RBP8.65□□□□□ -1.02
LDLR-210ENST00000559340 HNRNPFP52597 415 aaKnown RBP8.65□□□□□ -1.02
LDLR-210ENST00000559340 MANFP55145 182 aaKnown RBP8.65□□□□□ -1.02
LDLR-210ENST00000559340 TMPRSS3P57727 454 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 KCNK10P57789 538 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 RPS18P62269 152 aaKnown RBP8.65□□□□□ -1.02
LDLR-210ENST00000559340 PDE7AQ13946 482 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 PTGR1Q14914 329 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 MAPRE2Q15555 327 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 EXT1Q16394 746 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 PGS1Q32NB8 556 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 SFT2D3Q587I9 215 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 IRAK1BP1Q5VVH5 260 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 FAAH2Q6GMR7 532 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 CGB2Q6NT52 195 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 MSANTD1Q6ZTZ1 278 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 CAMKMTQ7Z624 323 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 ANKRD37Q7Z713 158 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 PIGWQ7Z7B1 504 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 CLNKQ7Z7G1 428 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 RIMKLAQ8IXN7 391 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 CPSF7Q8N684 471 aaKnown RBP8.65□□□□□ -1.02
LDLR-210ENST00000559340 TMEM102Q8N9M5 508 aaPredicted RBP8.65□□□□□ -1.02
LDLR-210ENST00000559340 MORN4Q8NDC4 146 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 OR8J2Q8NGG1 315 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 CLHC1Q8NHS4 586 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 TSPEARQ8WU66 669 aa8.65□□□□□ -1.02
LDLR-210ENST00000559340 C10orf82Q8WW14 230 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms