RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 PTOV1Q86YD1 416 aa12□□□□□ -0.49
SHMT2-229ENST00000557348 HIPK1Q86Z02 1210 aa12□□□□□ -0.49
SHMT2-229ENST00000557348 ZC3H7AQ8IWR0 971 aaKnown RBP12□□□□□ -0.49
SHMT2-229ENST00000557348 UBALD2Q8IYN6 164 aa12□□□□□ -0.49
SHMT2-229ENST00000557348 C8orf59Q8N0T1 100 aaPredicted RBP12□□□□□ -0.49
SHMT2-229ENST00000557348 CAMKVQ8NCB2 501 aa12□□□□□ -0.49
SHMT2-229ENST00000557348 C17orf62Q9BQA9 187 aa12□□□□□ -0.49
SHMT2-229ENST00000557348 ING2Q9H160 280 aa12□□□□□ -0.49
SHMT2-229ENST00000557348 LHX9Q9NQ69 397 aa12□□□□□ -0.49
SHMT2-229ENST00000557348 ACTR10Q9NZ32 417 aa12□□□□□ -0.49
SHMT2-229ENST00000557348 USE1Q9NZ43 259 aa12□□□□□ -0.49
SHMT2-229ENST00000557348 ANGPT4Q9Y264 503 aa12□□□□□ -0.49
SHMT2-229ENST00000557348 HEMK1Q9Y5R4 338 aaPredicted RBP12□□□□□ -0.49
SHMT2-229ENST00000557348 SNX5Q9Y5X3 404 aa12□□□□□ -0.49
SHMT2-229ENST00000557348 HSPE1-MOB4S4R3N1 261 aa12□□□□□ -0.49
SHMT2-229ENST00000557348 FAM149AA5PLN7 773 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 TAF4O00268 1085 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 BTN3A3O00478 584 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 NOBOXO60393 691 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 GABARAPO95166 117 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 OXSR1O95747 527 aaPredicted RBP11.99□□□□□ -0.49
SHMT2-229ENST00000557348 EML2O95834 649 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 GNAO1P09471 354 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 TFPTP0C1Z6 253 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 UGT2B7P16662 529 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 CRHBPP24387 322 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 ATP5A1P25705 553 aaKnown RBP11.99□□□□□ -0.49
SHMT2-229ENST00000557348 CD38P28907 300 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 SOAT1P35610 550 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 CRATP43155 626 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 ALDH9A1P49189 494 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 PLA2G16P53816 162 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 PCBP4P57723 403 aaKnown RBP11.99□□□□□ -0.49
SHMT2-229ENST00000557348 RACK1P63244 317 aaKnown RBP11.99□□□□□ -0.49
SHMT2-229ENST00000557348 SUZ12Q15022 739 aaKnown RBP11.99□□□□□ -0.49
SHMT2-229ENST00000557348 ZC3H12BQ5HYM0 836 aaKnown RBP11.99□□□□□ -0.49
SHMT2-229ENST00000557348 TOR1AIP1Q5JTV8 583 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 MRM1Q6IN84 353 aaKnown RBP11.99□□□□□ -0.49
SHMT2-229ENST00000557348 ARMC6Q6NXE6 501 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 ENPP6Q6UWR7 440 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 UBE3DQ7Z6J8 389 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 OR5K1Q8NHB7 308 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 CCL4L1Q8NHW4 92 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 RASSF5Q8WWW0 418 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 MUL1Q969V5 352 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 FKBP10Q96AY3 582 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 NEURL3Q96EH8 262 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 RBM4BQ9BQ04 359 aaKnown RBP11.99□□□□□ -0.49
SHMT2-229ENST00000557348 RBM4Q9BWF3 364 aaKnown RBP11.99□□□□□ -0.49
SHMT2-229ENST00000557348 ABCG4Q9H172 646 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 UCK1Q9HA47 277 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 IL1RAPQ9NPH3 570 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 SEMA3GQ9NS98 782 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 PAK1IP1Q9NWT1 392 aaPredicted RBP11.99□□□□□ -0.49
SHMT2-229ENST00000557348 APOBEC3BQ9UH17 382 aaKnown RBP11.99□□□□□ -0.49
SHMT2-229ENST00000557348 PHF11Q9UIL8 331 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 V9GYQ6 96 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 CROCCQ5TZA2 2017 aa11.99□□□□□ -0.49
SHMT2-229ENST00000557348 A0A0J9YY10 115 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 G3V2T6 193 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 RTCAO00442 366 aaKnown RBP11.98□□□□□ -0.49
SHMT2-229ENST00000557348 EI24O14681 340 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 SUV39H1O43463 412 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 TMPRSS11DO60235 418 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 TNFRSF21O75509 655 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 ZNF682O95780 498 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 FABP3P05413 133 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 MATN1P21941 496 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 CXCR4P61073 352 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 TUBA1BP68363 451 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 HYAL2Q12891 473 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 DAG1Q14118 895 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 MPEG1Q2M385 716 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.98□□□□□ -0.49
SHMT2-229ENST00000557348 ATAD3BQ5T9A4 648 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 NDUFAF5Q5TEU4 345 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 XAF1Q6GPH4 301 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 SPESP1Q6UW49 350 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 TMEM64Q6YI46 380 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 TUBA1AQ71U36 451 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 ABHD13Q7L211 337 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 PIWIL3Q7Z3Z3 882 aaKnown RBP11.98□□□□□ -0.49
SHMT2-229ENST00000557348 GKN2Q86XP6 184 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 PLD3Q8IV08 490 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 ZDHHC21Q8IVQ6 265 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 ACOT4Q8N9L9 421 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 SFXN5Q8TD22 340 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 TMBIM1Q969X1 311 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 RERGQ96A58 199 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-229ENST00000557348 CIDECQ96AQ7 238 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-229ENST00000557348 TEFMQ96QE5 360 aaKnown RBP11.98□□□□□ -0.49
SHMT2-229ENST00000557348 OR2A14Q96R47 310 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 ZFYVE21Q9BQ24 234 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 DPH2Q9BQC3 489 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-229ENST00000557348 ORAI3Q9BRQ5 295 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 SORBS1Q9BX66 1292 aaKnown RBP11.98□□□□□ -0.49
SHMT2-229ENST00000557348 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.98□□□□□ -0.49
SHMT2-229ENST00000557348 FANCEQ9HB96 536 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 TM9SF3Q9HD45 589 aa11.98□□□□□ -0.49
SHMT2-229ENST00000557348 SLC35C2Q9NQQ7 365 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms