RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 GPR32P1Q8NGA4 272 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 AP3S1Q92572 193 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 ZSCAN5AQ9BUG6 496 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 RERGLQ9H628 205 aa16.68■□□□□ 0.26
SYNE3-202ENST00000553340 A0A0B4J293 547 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 TLX2O43763 284 aaPredicted RBP16.67■□□□□ 0.26
SYNE3-202ENST00000553340 TNNI3P19429 210 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 HLA-DMAP28067 261 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 HLA-FP30511 346 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 VIPR1P32241 457 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 GPC1P35052 558 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 PPP2R2DQ66LE6 453 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 TNFAIP8L2Q6P589 184 aaPredicted RBP16.67■□□□□ 0.26
SYNE3-202ENST00000553340 DEF8Q6ZN54 512 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 Q6ZVU0 165 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 IKBIPQ70UQ0 350 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 LAPTM4BQ86VI4 370 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 CMTM8Q8IZV2 173 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 CRIPAKQ8N1N5 446 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 UBE2J2Q8N2K1 259 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 RNF31Q96EP0 1072 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 IGSF21Q96ID5 467 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 GON7Q9BXV9 100 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 ANKRA2Q9H9E1 313 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 SH2B3Q9UQQ2 575 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 SPIN1Q9Y657 262 aaPredicted RBP16.67■□□□□ 0.26
SYNE3-202ENST00000553340 DOCK6Q96HP0 2047 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 PLA2G10O15496 165 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 SEMA7AO75326 666 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 PDE9AO76083 593 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 URODP06132 367 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 PDHA2P29803 388 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 ERP29P30040 261 aaKnown RBP16.67■□□□□ 0.26
SYNE3-202ENST00000553340 SDC2P34741 201 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 SMIM11AP58511 58 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 RPS26P62854 115 aaKnown RBP16.67■□□□□ 0.26
SYNE3-202ENST00000553340 CYP4F8P98187 520 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 CCDC58Q4VC31 144 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 ATAT1Q5SQI0 421 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 LCN1P1Q5VSP4 162 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 PLET1Q6UQ28 207 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 DDX53Q86TM3 631 aaKnown RBP16.67■□□□□ 0.26
SYNE3-202ENST00000553340 PEX5LQ8IYB4 626 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 FAM26EQ8N5C1 309 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 HORMAD2Q8N7B1 307 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 OR52I1Q8NGK6 324 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 TMEM169Q96HH4 297 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 TMEM19Q96HH6 336 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 DHRS1Q96LJ7 313 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 MED18Q9BUE0 208 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 IL21Q9HBE4 155 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 A4GALTQ9NPC4 353 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 SEMA3GQ9NS98 782 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 ACOXLQ9NUZ1 547 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 TAAR2Q9P1P5 351 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 ICKQ9UPZ9 632 aa16.67■□□□□ 0.26
SYNE3-202ENST00000553340 OR6C70A6NIJ9 312 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 PITPNM1O00562 1244 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 CPN2P22792 545 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 PBLDP30039 288 aaPredicted RBP16.66■□□□□ 0.26
SYNE3-202ENST00000553340 PRLHRP49683 370 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 ZNF284Q2VY69 593 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 HENMT1Q5T8I9 393 aaKnown RBP16.66■□□□□ 0.26
SYNE3-202ENST00000553340 BRAT1Q6PJG6 821 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 TCTE3Q8IZS6 198 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 CELF5Q8N6W0 485 aaKnown RBP16.66■□□□□ 0.26
SYNE3-202ENST00000553340 LMLNQ96KR4 655 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 POLDIP3Q9BY77 421 aaKnown RBP16.66■□□□□ 0.26
SYNE3-202ENST00000553340 MRPL17Q9NRX2 175 aaKnown RBP16.66■□□□□ 0.26
SYNE3-202ENST00000553340 ANKDD1BA6NHY2 528 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 TMEM88BA6NKF7 163 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 GRM6O15303 877 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 PRKYO43930 277 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 SH3BP5O60239 455 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 C1orf105O95561 183 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 CHRM5P08912 532 aaPredicted RBP16.66■□□□□ 0.26
SYNE3-202ENST00000553340 MYL12AP19105 171 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 ETV5P41161 510 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 ETV1P50549 477 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 HOXC5Q00444 222 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 MEF2AQ02078 507 aaPredicted RBP16.66■□□□□ 0.26
SYNE3-202ENST00000553340 PLK5Q496M5 336 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 IQCF1Q8N6M8 205 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 NEURL3Q96EH8 262 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 C1GALT1C1Q96EU7 318 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 STARD7Q9NQZ5 370 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 INSL5Q9Y5Q6 135 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 KIAA1671Q9BY89 1806 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 NR2F6P10588 404 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 SSTR4P31391 388 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 ALDH6A1Q02252 535 aaKnown RBP16.66■□□□□ 0.26
SYNE3-202ENST00000553340 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.66■□□□□ 0.26
SYNE3-202ENST00000553340 FAM180BQ6P0A1 224 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 TMIGD1Q6UXZ0 262 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 MMP21Q8N119 569 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 KLHL21Q9UJP4 597 aa16.66■□□□□ 0.26
SYNE3-202ENST00000553340 STK25O00506 426 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 NME6O75414 186 aaPredicted RBP16.65■□□□□ 0.26
SYNE3-202ENST00000553340 OPRD1P41143 372 aa16.65■□□□□ 0.26
SYNE3-202ENST00000553340 IL12RB1P42701 662 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms