RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 HYAL1Q12794 435 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 MTAPQ13126 283 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 HEPACAMQ14CZ8 416 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 DUSP6Q16828 381 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF691Q5VV52 312 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 METRNLQ641Q3 311 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF776Q68DI1 518 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-215ENST00000552823 SMARCD3Q6STE5 483 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 Q6ZS52 159 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 USP51Q70EK9 711 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 PRSS41Q7RTY9 318 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 TSEN54Q7Z6J9 526 aaKnown RBP5.3□□□□□ -1.56
LIMA1-215ENST00000552823 NUDT13Q86X67 352 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 VRK2Q86Y07 508 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 ARMC8Q8IUR7 673 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 CCDC103Q8IW40 242 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 RAB42Q8N4Z0 105 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 OR52N2Q8NGI0 321 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 OR4D11Q8NGI4 311 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 OR5K2Q8NHB8 316 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 WDR36Q8NI36 951 aaKnown RBP5.3□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF514Q96K75 400 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-215ENST00000552823 SLC35G5Q96KT7 338 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 C7orf34Q96L11 122 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 TBX5Q99593 518 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 KCNS3Q9BQ31 491 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 SGPP1Q9BX95 441 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 OR51E2Q9H255 320 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 GLIPR2Q9H4G4 154 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 MVB12BQ9H7P6 319 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 NMNAT1Q9HAN9 279 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-215ENST00000552823 C1GALT1Q9NS00 363 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 TMEM74BQ9NUR3 256 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 CARD8Q9Y2G2 431 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 PIAS3Q9Y6X2 628 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 CELSR3Q9NYQ7 3312 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 MDC1Q14676 2089 aaKnown RBP5.3□□□□□ -1.56
LIMA1-215ENST00000552823 TCRBV21S2A2A0A5A6 115 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 B4DGG1 531 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 TLX2O43763 284 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-215ENST00000552823 VEGFDO43915 354 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 UGT2B11O75310 529 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 KLHL18O94889 574 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 CCNB2O95067 398 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 TBX6O95947 436 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-215ENST00000552823 CTSBP07858 339 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 GKN3PP0CG01 181 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 MYF5P13349 255 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 FCARP24071 287 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 NTSR1P30989 418 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 ATP6V1E1P36543 226 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 TGM4P49221 684 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 UBE3AQ05086 875 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 KCNC3Q14003 757 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 SLC9A5Q14940 896 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 MAD2L1BPQ15013 274 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-215ENST00000552823 ADPRMQ3LIE5 342 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 COLEC12Q5KU26 742 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 SLC35F1Q5T1Q4 408 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 OR4C11Q6IEV9 310 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 FIGNL1Q6PIW4 674 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 FAM111BQ6SJ93 734 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 NEK10Q6ZWH5 1172 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 TAF8Q7Z7C8 310 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 IQCHQ86VS3 1027 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 ENTHD1Q8IYW4 607 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 ACOT4Q8N9L9 421 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 SETD9Q8NE22 299 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 OR2A1Q8NGT9 310 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 ZFAND2BQ8WV99 257 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 HTRA1Q92743 480 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 HDAC2Q92769 488 aaKnown RBP5.3□□□□□ -1.56
LIMA1-215ENST00000552823 TANKQ92844 425 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 UBE2E3Q969T4 207 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 ZHX1-C8orf76Q96EF9 292 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 Q96MT0 163 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 MAPKAP1Q9BPZ7 522 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 MS4A8Q9BY19 250 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 ZBTB20Q9HC78 741 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-215ENST00000552823 C2orf42Q9NWW7 574 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 USE1Q9NZ43 259 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 CNIH4Q9P003 139 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 ZNF229Q9UJW7 825 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 MAFFQ9ULX9 164 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 ENTPD4Q9Y227 616 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 CAB39Q9Y376 341 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-215ENST00000552823 PCDHGA10Q9Y5H3 936 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 DNMT3AQ9Y6K1 912 aaPredicted RBP5.3□□□□□ -1.56
LIMA1-215ENST00000552823 SLCO1B1Q9Y6L6 691 aa5.3□□□□□ -1.56
LIMA1-215ENST00000552823 LOC105369274A0A096LPK9 316 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 LOC102723532A0A0G2JNH3 316 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 A0A1W2PR48 441 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 C1orf226A1L170 272 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 A8MUA0 341 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 PSMD11O00231 422 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 EIF3FO00303 357 aaPredicted RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 CASC3O15234 703 aaKnown RBP5.29□□□□□ -1.56
LIMA1-215ENST00000552823 FCMRO60667 390 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 FUT1P19526 365 aa5.29□□□□□ -1.56
LIMA1-215ENST00000552823 GADD45AP24522 165 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms