RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 IFI6P09912 130 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 PORP16435 677 aaPredicted RBP16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 SDC1P18827 310 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 STT3AP46977 705 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 ALDH9A1P49189 494 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 AQP5P55064 265 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 CLDN8P56748 225 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 SOX8P57073 446 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 RHDQ02161 417 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 FOLH1Q04609 750 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 IL10RAQ13651 578 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 C18orf63Q68DL7 685 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 KIRREL2Q6UWL6 708 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 GLB1L3Q8NCI6 653 aaPredicted RBP16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 MORN4Q8NDC4 146 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 VPS37AQ8NEZ2 397 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 OR11G2Q8NGC1 345 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 ZFP28Q8NHY6 868 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 M1APQ8TC57 530 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 SLC39A7Q92504 469 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 CSF3RQ99062 836 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 EBPLQ9BY08 206 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 RBCK1Q9BYM8 510 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 PRORYQ9H606 182 aa16.42■□□□□ 0.22
CLSTN3-210ENST00000540931 ZNF195O14628 629 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 ATXN7O15265 892 aaPredicted RBP16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 DNAJB6O75190 326 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 BCAS2O75934 225 aaPredicted RBP16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 TNNI3P19429 210 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 MAOAP21397 527 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 EPHA3P29320 983 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 NTSP30990 170 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 XKP51811 444 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 STX1BP61266 288 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 CXADRP78310 365 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 BTG2P78543 158 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 SRSF11Q05519 484 aaKnown RBP16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 SFT2D3Q587I9 215 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 DCAF10Q5QP82 559 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 PLAG1Q6DJT9 500 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 BORAQ6PGQ7 559 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 LRRC25Q8N386 305 aaPredicted RBP16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 LIX1Q8N485 282 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 ANKRD9Q96BM1 317 aaPredicted RBP16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 PPCDCQ96CD2 204 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 KLHL29Q96CT2 875 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 ZBTB18Q99592 522 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 DPY30Q9C005 99 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 SLC35C2Q9NQQ7 365 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 COPS7AQ9UBW8 275 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 CES1P1Q9UKY3 287 aa16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 PPIEQ9UNP9 301 aaKnown RBP16.41■□□□□ 0.22
CLSTN3-210ENST00000540931 ZNF462Q96JM2 2506 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 SAGE2PA6NJ88 616 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 FGF17O60258 216 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 LDB3O75112 727 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 ATP1B1P05026 303 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 JUNP05412 331 aaKnown RBP16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 PRKAR1AP10644 381 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 SFTPCP11686 197 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 COX6A1P12074 109 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 CPMP14384 443 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 ATP1A4Q13733 1029 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 CEBPEQ15744 281 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 PAPD4Q6PIY7 484 aaKnown RBP16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 MTERF4Q7Z6M4 381 aaKnown RBP16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 HPS6Q86YV9 775 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 TMEM151BQ8IW70 566 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 KBTBD2Q8IY47 623 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 CDC26Q8NHZ8 85 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 ZBED6CLQ96FA7 236 aaPredicted RBP16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 PPP1R36Q96LQ0 422 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 RILPQ96NA2 401 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 TSSK3Q96PN8 268 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 BBS4Q96RK4 519 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 BRINP2Q9C0B6 783 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 NECTIN3Q9NQS3 549 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 ACSS1Q9NUB1 689 aaPredicted RBP16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 FAM53CQ9NYF3 392 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 KLHL14Q9P2G3 628 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 ATP6V1HQ9UI12 483 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 TEKT2Q9UIF3 430 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 FBXL4Q9UKA2 621 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 CFL2Q9Y281 166 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 PCDHGB7Q9Y5F8 929 aa16.4■□□□□ 0.22
CLSTN3-210ENST00000540931 SCAMP2O15127 329 aaKnown RBP16.39■□□□□ 0.21
CLSTN3-210ENST00000540931 PGRMC2O15173 223 aa16.39■□□□□ 0.21
CLSTN3-210ENST00000540931 ERAL1O75616 437 aaKnown RBP16.39■□□□□ 0.21
CLSTN3-210ENST00000540931 SERPINA7P05543 415 aa16.39■□□□□ 0.21
CLSTN3-210ENST00000540931 FURINP09958 794 aa16.39■□□□□ 0.21
CLSTN3-210ENST00000540931 G6PDP11413 515 aa16.39■□□□□ 0.21
CLSTN3-210ENST00000540931 MRPL19P49406 292 aaKnown RBP16.39■□□□□ 0.21
CLSTN3-210ENST00000540931 IDH3AP50213 366 aa16.39■□□□□ 0.21
CLSTN3-210ENST00000540931 PDE7AQ13946 482 aa16.39■□□□□ 0.21
CLSTN3-210ENST00000540931 SPRED3Q2MJR0 410 aa16.39■□□□□ 0.21
CLSTN3-210ENST00000540931 LSM12Q3MHD2 195 aaKnown RBP16.39■□□□□ 0.21
CLSTN3-210ENST00000540931 SLC9B1Q4ZJI4 515 aa16.39■□□□□ 0.21
CLSTN3-210ENST00000540931 PDCD4Q53EL6 469 aaKnown RBP16.39■□□□□ 0.21
CLSTN3-210ENST00000540931 CPTPQ5TA50 214 aa16.39■□□□□ 0.21
CLSTN3-210ENST00000540931 CPZQ66K79 652 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms