RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 PRAMEF17Q5VTA0 474 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 ZBTB49Q6ZSB9 765 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 TRIM73Q86UV7 250 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 CALHM3Q86XJ0 350 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 FAM20CQ8IXL6 584 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 MICU2Q8IYU8 434 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 C10orf111Q8N326 155 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 CENPNQ96H22 339 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-208ENST00000537004 TEFMQ96QE5 360 aaKnown RBP11.3□□□□□ -0.6
CLIP1-208ENST00000537004 SLC29A1Q99808 456 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 CENPKQ9BS16 269 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 DUSP26Q9BV47 211 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 PCBD2Q9H0N5 130 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 PELI2Q9HAT8 420 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 POMT2Q9UKY4 750 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 PCDHGA4Q9Y5G9 962 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 SPTBP11277 2137 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 LOC101059948A0A1B0GTJ6 334 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 A0A1W2PPV9 198 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 SAC3D1A6NKF1 404 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 ENO4A6NNW6 628 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 CXCR6O00574 342 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 SCELO95171 688 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 MT-ND1P03886 318 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 GBAP04062 536 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 PIM1P11309 404 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-208ENST00000537004 LIFP15018 202 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 CDH3P22223 829 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 ARL4DP49703 201 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 GZMMP51124 257 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 HSD11B2P80365 405 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 C6orf52Q5T4I8 152 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 PWWP2BQ6NUJ5 590 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 VN1R5Q7Z5H4 357 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 CAMKMTQ7Z624 323 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 CLECL1Q8IZS7 167 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 MARVELD2Q8N4S9 558 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 RAB42Q8N4Z0 105 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 LINC01555Q8NAE3 123 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 GALNT6Q8NCL4 622 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 ZNF597Q96LX8 424 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 RNF145Q96MT1 663 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 PRPF18Q99633 342 aaKnown RBP11.3□□□□□ -0.6
CLIP1-208ENST00000537004 AIF1LQ9BQI0 150 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 AKIRIN1Q9H9L7 192 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-208ENST00000537004 FGF21Q9NSA1 209 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 CUEDC1Q9NWM3 386 aaPredicted RBP11.3□□□□□ -0.6
CLIP1-208ENST00000537004 SOHLH2Q9NX45 425 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 IL17BQ9UHF5 180 aa11.3□□□□□ -0.6
CLIP1-208ENST00000537004 TLN1Q9Y490 2541 aaKnown RBP11.29□□□□□ -0.6
CLIP1-208ENST00000537004 SPTA1P02549 2419 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 C7orf72A4D263 438 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 EVPLLA8MZ36 301 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 SOCS2O14508 198 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 CPSF4O95639 269 aaKnown RBP11.29□□□□□ -0.6
CLIP1-208ENST00000537004 DLGAP3O95886 979 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 NTRK1P04629 796 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 EFNA1P20827 205 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-208ENST00000537004 PTX3P26022 381 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-208ENST00000537004 CCR8P51685 355 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 ABHD18Q0P651 414 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 ATP6AP1Q15904 470 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 INTS11Q5TA45 600 aaKnown RBP11.29□□□□□ -0.6
CLIP1-208ENST00000537004 PPP4R4Q6NUP7 873 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 PPP1R3BQ86XI6 285 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 EPHX4Q8IUS5 362 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 NLGN4XQ8N0W4 816 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 METTL4Q8N3J2 472 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 D2HGDHQ8N465 521 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 ABHD11Q8NFV4 315 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 NLGN4YQ8NFZ3 816 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-208ENST00000537004 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.29□□□□□ -0.6
CLIP1-208ENST00000537004 SNRNP27Q8WVK2 155 aaKnown RBP11.29□□□□□ -0.6
CLIP1-208ENST00000537004 COQ8BQ96D53 544 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 CD180Q99467 661 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 CHID1Q9BWS9 393 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 ACTR10Q9NZ32 417 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 ADGRE2Q9UHX3 823 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 EXO1Q9UQ84 846 aaKnown RBP11.29□□□□□ -0.6
CLIP1-208ENST00000537004 ERVK-11Q9UQG0 969 aa11.29□□□□□ -0.6
CLIP1-208ENST00000537004 TMEM184BQ9Y519 407 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-208ENST00000537004 ARHGAP10A1A4S6 786 aa11.28□□□□□ -0.6
CLIP1-208ENST00000537004 H7BY64 318 aa11.28□□□□□ -0.6
CLIP1-208ENST00000537004 ZBTB11O95625 1053 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-208ENST00000537004 ZCCHC18P0CG32 403 aa11.28□□□□□ -0.6
CLIP1-208ENST00000537004 FGF5P12034 268 aa11.28□□□□□ -0.6
CLIP1-208ENST00000537004 F8A1P23610 371 aa11.28□□□□□ -0.6
CLIP1-208ENST00000537004 CXCR2P25025 360 aa11.28□□□□□ -0.6
CLIP1-208ENST00000537004 RAB28P51157 221 aa11.28□□□□□ -0.6
CLIP1-208ENST00000537004 IL11RAQ14626 422 aa11.28□□□□□ -0.6
CLIP1-208ENST00000537004 FAM98BQ52LJ0 330 aaKnown RBP11.28□□□□□ -0.6
CLIP1-208ENST00000537004 ZNF621Q6ZSS3 439 aa11.28□□□□□ -0.6
CLIP1-208ENST00000537004 CBR4Q8N4T8 237 aa11.28□□□□□ -0.6
CLIP1-208ENST00000537004 VPS37AQ8NEZ2 397 aa11.28□□□□□ -0.6
CLIP1-208ENST00000537004 OR52E4Q8NGH9 312 aa11.28□□□□□ -0.6
CLIP1-208ENST00000537004 NCLNQ969V3 563 aa11.28□□□□□ -0.6
CLIP1-208ENST00000537004 FAM162AQ96A26 154 aa11.28□□□□□ -0.6
CLIP1-208ENST00000537004 REXO5Q96IC2 774 aaKnown RBP11.28□□□□□ -0.6
CLIP1-208ENST00000537004 PRAP1Q96NZ9 151 aa11.28□□□□□ -0.6
CLIP1-208ENST00000537004 ZPBPQ9BS86 351 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms