RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 ZNF835Q9Y2P0 537 aa9.88□□□□□ -0.83
CD44-227ENST00000528086 FBN2P35556 2912 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 PLIN3O60664 434 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 ZG16O60844 167 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 CD46P15529 392 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 CREB1P16220 341 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 ATP5F1P24539 256 aaPredicted RBP9.87□□□□□ -0.83
CD44-227ENST00000528086 RAP1GDS1P52306 607 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 GPR85P60893 370 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 SLC18A2Q05940 514 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 STX4Q12846 297 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 SERTAD2Q14140 314 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 RASA2Q15283 850 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 MAPKAPK3Q16644 382 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 ZNF791Q3KP31 576 aaPredicted RBP9.87□□□□□ -0.83
CD44-227ENST00000528086 FAM180BQ6P0A1 224 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 SCIMPQ6UWF3 145 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 ZYG11AQ6WRX3 759 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 NCCRP1Q6ZVX7 275 aaPredicted RBP9.87□□□□□ -0.83
CD44-227ENST00000528086 COMMD6Q7Z4G1 85 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 ZNF441Q8N8Z8 693 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 OR8K3Q8NH51 312 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 AENQ8WTP8 325 aaKnown RBP9.87□□□□□ -0.83
CD44-227ENST00000528086 CHTF18Q8WVB6 975 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 TANKQ92844 425 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 NTNG2Q96CW9 530 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 FBXL20Q96IG2 436 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 GPR137Q96N19 417 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 ACPTQ9BZG2 426 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 HEY2Q9UBP5 337 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 TRPS1Q9UHF7 1281 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 PHF11Q9UIL8 331 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 MRPS33Q9Y291 106 aaKnown RBP9.87□□□□□ -0.83
CD44-227ENST00000528086 YARS2Q9Y2Z4 477 aaKnown RBP9.87□□□□□ -0.83
CD44-227ENST00000528086 TIMM22Q9Y584 194 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 CLCA3PQ9Y6N3 262 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 ADGRG4Q8IZF6 3080 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 CACNA1CQ13936 2221 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 MED12Q93074 2177 aa9.87□□□□□ -0.83
CD44-227ENST00000528086 IQANK1A0A1B0GTG1 560 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 NPIPA5E9PKD4 350 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 CDK2AP1O14519 115 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 ADAM10O14672 748 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 ZNF500O60304 480 aaPredicted RBP9.86□□□□□ -0.83
CD44-227ENST00000528086 SUPT7LO94864 414 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 OTCP00480 354 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 UQCRHP07919 91 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 GSTA1P08263 222 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 NR2F6P10588 404 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 ALOX15P16050 662 aaPredicted RBP9.86□□□□□ -0.83
CD44-227ENST00000528086 SSTR4P31391 388 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 ARRB2P32121 409 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 MEOX1P50221 254 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 SLC37A1P57057 533 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 ERVK-8P63133 956 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 FOXO1Q12778 655 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 RCN2Q14257 317 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 C3AR1Q16581 482 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 SPRED3Q2MJR0 410 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 CMPK2Q5EBM0 449 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 PIGGQ5H8A4 983 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 LGSNQ5TDP6 509 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 NDUFAF5Q5TEU4 345 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 GFRALQ6UXV0 394 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 HSDL2Q6YN16 418 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 Q6ZPB1 254 aaPredicted RBP9.86□□□□□ -0.83
CD44-227ENST00000528086 GPRIN3Q6ZVF9 776 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 LCA5Q86VQ0 697 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 NUDT13Q86X67 352 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 ST13P4Q8IZP2 240 aaPredicted RBP9.86□□□□□ -0.83
CD44-227ENST00000528086 CYP4Z2PQ8N1L4 340 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 C1orf52Q8N6N3 182 aaKnown RBP9.86□□□□□ -0.83
CD44-227ENST00000528086 ZNF615Q8N8J6 731 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 ZFP62Q8NB50 900 aaPredicted RBP9.86□□□□□ -0.83
CD44-227ENST00000528086 C16orf52Q8NHV5 167 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 AGAP11Q8TF27 550 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 UBLCP1Q8WVY7 318 aaPredicted RBP9.86□□□□□ -0.83
CD44-227ENST00000528086 SELENOMQ8WWX9 145 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 DAZLQ92904 295 aaKnown RBP9.86□□□□□ -0.83
CD44-227ENST00000528086 ATP6V1E2Q96A05 226 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 REPS1Q96D71 796 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 APIPQ96GX9 242 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 ZNF681Q96N22 645 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 CXorf21Q9HAI6 301 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 LYARQ9NX58 379 aaKnown RBP9.86□□□□□ -0.83
CD44-227ENST00000528086 MS4A12Q9NXJ0 267 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 SEC14L3Q9UDX4 400 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 ADAM29Q9UKF5 820 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 NPIPA1Q9UND3 350 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 SLC12A4Q9UP95 1085 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 EXO1Q9UQ84 846 aaKnown RBP9.86□□□□□ -0.83
CD44-227ENST00000528086 ERVK-19Q9WJR5 959 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 DTX4Q9Y2E6 619 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 CCL27Q9Y4X3 112 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 DCHS2Q6V1P9 2916 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 TEX15Q9BXT5 2789 aa9.86□□□□□ -0.83
CD44-227ENST00000528086 PCNX3Q9H6A9 2034 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 SMIM23A6NLE4 172 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 G3V3Y1 287 aa9.85□□□□□ -0.83
CD44-227ENST00000528086 ASNA1O43681 348 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms