RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 RCN1Q15293 331 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 PHF19Q5T6S3 580 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 CPZQ66K79 652 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 ERICH5Q6P6B1 374 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 SLITRK4Q8IW52 837 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 AQP12AQ8IXF9 295 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 ENDOVQ8N8Q3 282 aaKnown RBP19.8■□□□□ 0.76
VPS28-208ENST00000527797 PRSS33Q8NF86 280 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 PYDC1Q8WXC3 89 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 MVB12AQ96EY5 273 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 LRFN3Q9BTN0 628 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 SPATA9Q9BWV2 254 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 TMEM9BQ9NQ34 198 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 SEMA4GQ9NTN9 838 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 NDOR1Q9UHB4 597 aa19.8■□□□□ 0.76
VPS28-208ENST00000527797 BLACEA4D250 179 aa19.79■□□□□ 0.76
VPS28-208ENST00000527797 ALAS2P22557 587 aa19.79■□□□□ 0.76
VPS28-208ENST00000527797 CRATP43155 626 aa19.79■□□□□ 0.76
VPS28-208ENST00000527797 GCGRP47871 477 aa19.79■□□□□ 0.76
VPS28-208ENST00000527797 CCT3P49368 545 aaKnown RBP19.79■□□□□ 0.76
VPS28-208ENST00000527797 RHDQ02161 417 aa19.79■□□□□ 0.76
VPS28-208ENST00000527797 DUSP2Q05923 314 aa19.79■□□□□ 0.76
VPS28-208ENST00000527797 FADDQ13158 208 aa19.79■□□□□ 0.76
VPS28-208ENST00000527797 DDX59Q5T1V6 619 aaKnown RBP eCLIP19.79■□□□□ 0.76
VPS28-208ENST00000527797 OR4N5Q8IXE1 308 aa19.79■□□□□ 0.76
VPS28-208ENST00000527797 LRRC25Q8N386 305 aaPredicted RBP19.79■□□□□ 0.76
VPS28-208ENST00000527797 METTL27Q8N6F8 245 aaPredicted RBP19.79■□□□□ 0.76
VPS28-208ENST00000527797 TMEM52Q8NDY8 209 aa19.79■□□□□ 0.76
VPS28-208ENST00000527797 EPS8L2Q9H6S3 715 aa19.79■□□□□ 0.76
VPS28-208ENST00000527797 CDC14AQ9UNH5 594 aa19.79■□□□□ 0.76
VPS28-208ENST00000527797 MRPS33Q9Y291 106 aaKnown RBP19.79■□□□□ 0.76
VPS28-208ENST00000527797 A0A1W2PS29 197 aa19.78■□□□□ 0.76
VPS28-208ENST00000527797 TCRBV3S1A0A5B6 114 aa19.78■□□□□ 0.76
VPS28-208ENST00000527797 KCNK5O95279 499 aa19.78■□□□□ 0.76
VPS28-208ENST00000527797 GPR75O95800 540 aa19.78■□□□□ 0.76
VPS28-208ENST00000527797 C8BP07358 591 aa19.78■□□□□ 0.76
VPS28-208ENST00000527797 MVDP53602 400 aa19.78■□□□□ 0.76
VPS28-208ENST00000527797 MRPS22P82650 360 aaKnown RBP19.78■□□□□ 0.76
VPS28-208ENST00000527797 MAT1AQ00266 395 aaKnown RBP19.78■□□□□ 0.76
VPS28-208ENST00000527797 FOLH1Q04609 750 aa19.78■□□□□ 0.76
VPS28-208ENST00000527797 TRA2AQ13595 282 aaKnown RBP eCLIP19.78■□□□□ 0.76
VPS28-208ENST00000527797 SAXO2Q658L1 398 aa19.78■□□□□ 0.76
VPS28-208ENST00000527797 ZFP1Q6P2D0 407 aa19.78■□□□□ 0.76
VPS28-208ENST00000527797 TMEM64Q6YI46 380 aa19.78■□□□□ 0.76
VPS28-208ENST00000527797 NAXDQ8IW45 347 aa19.78■□□□□ 0.76
VPS28-208ENST00000527797 SHISA5Q8N114 240 aa19.78■□□□□ 0.76
VPS28-208ENST00000527797 FIG4Q92562 907 aa19.78■□□□□ 0.76
VPS28-208ENST00000527797 NEURL3Q96EH8 262 aa19.78■□□□□ 0.76
VPS28-208ENST00000527797 PEX11GQ96HA9 241 aa19.78■□□□□ 0.76
VPS28-208ENST00000527797 NSMCE2Q96MF7 247 aa19.78■□□□□ 0.76
VPS28-208ENST00000527797 RXFP3Q9NSD7 469 aa19.78■□□□□ 0.76
VPS28-208ENST00000527797 NKX1-2Q9UD57 310 aaPredicted RBP19.78■□□□□ 0.76
VPS28-208ENST00000527797 MAP4K5Q9Y4K4 846 aa19.78■□□□□ 0.76
VPS28-208ENST00000527797 RP1P56715 2156 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 CXCR6O00574 342 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 FGF17O60258 216 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 LDB3O75112 727 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 CPMP14384 443 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 PORP16435 677 aaPredicted RBP19.77■□□□□ 0.76
VPS28-208ENST00000527797 PPP2R1BP30154 601 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 CSRP2Q16527 193 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 VMACQ2NL98 169 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 PRAMEF17Q5VTA0 474 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 C6orf120Q7Z4R8 191 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 RNF130Q86XS8 419 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 ZZZ3Q8IYH5 903 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 MOAP1Q96BY2 351 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 OR6C1Q96RD1 312 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 CHST8Q9H2A9 424 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 GORASP2Q9H8Y8 452 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 GPATCH2Q9NW75 528 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 STX18Q9P2W9 335 aaKnown RBP19.77■□□□□ 0.76
VPS28-208ENST00000527797 NCDNQ9UBB6 729 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 DHCR7Q9UBM7 475 aaKnown RBP19.77■□□□□ 0.76
VPS28-208ENST00000527797 RARRES3Q9UL19 164 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 SRPK3Q9UPE1 567 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 DNAH14Q0VDD8 3507 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 SCN3AQ9NY46 2000 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 ASXL3Q9C0F0 2248 aa19.77■□□□□ 0.76
VPS28-208ENST00000527797 CROCCQ5TZA2 2017 aa19.77■□□□□ 0.75
VPS28-208ENST00000527797 CLDN4O14493 209 aa19.76■□□□□ 0.75
VPS28-208ENST00000527797 DSCR3O14972 297 aa19.76■□□□□ 0.75
VPS28-208ENST00000527797 POLE2P56282 527 aa19.76■□□□□ 0.75
VPS28-208ENST00000527797 ID2Q02363 134 aa19.76■□□□□ 0.75
VPS28-208ENST00000527797 ZFP36L1Q07352 338 aaKnown RBP19.76■□□□□ 0.75
VPS28-208ENST00000527797 SYT16Q17RD7 645 aa19.76■□□□□ 0.75
VPS28-208ENST00000527797 COX20Q5RI15 118 aa19.76■□□□□ 0.75
VPS28-208ENST00000527797 BHLHB9Q6PI77 547 aa19.76■□□□□ 0.75
VPS28-208ENST00000527797 ZNF595Q8IYB9 648 aa19.76■□□□□ 0.75
VPS28-208ENST00000527797 GOLM1Q8NBJ4 401 aa19.76■□□□□ 0.75
VPS28-208ENST00000527797 OR9A2Q8NGT5 310 aa19.76■□□□□ 0.75
VPS28-208ENST00000527797 OR51Q1Q8NH59 317 aa19.76■□□□□ 0.75
VPS28-208ENST00000527797 SFXN5Q8TD22 340 aa19.76■□□□□ 0.75
VPS28-208ENST00000527797 COL26A1Q96A83 441 aa19.76■□□□□ 0.75
VPS28-208ENST00000527797 TMEM121BQ9BXQ6 578 aaPredicted RBP19.76■□□□□ 0.75
VPS28-208ENST00000527797 ZCCHC3Q9NUD5 404 aaKnown RBP19.76■□□□□ 0.75
VPS28-208ENST00000527797 RAPGEFL1Q9UHV5 662 aa19.76■□□□□ 0.75
VPS28-208ENST00000527797 TMEM184BQ9Y519 407 aaPredicted RBP19.76■□□□□ 0.75
VPS28-208ENST00000527797 MAU2Q9Y6X3 613 aa19.76■□□□□ 0.75
VPS28-208ENST00000527797 USP34Q70CQ2 3546 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms