RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 HEPACAMQ14CZ8 416 aa14.37□□□□□ -0.11
LSM1-203ENST00000520755 SPANXN4Q5MJ08 99 aa14.37□□□□□ -0.11
LSM1-203ENST00000520755 OR52E8Q6IFG1 317 aa14.37□□□□□ -0.11
LSM1-203ENST00000520755 FAM180BQ6P0A1 224 aa14.37□□□□□ -0.11
LSM1-203ENST00000520755 GK5Q6ZS86 529 aa14.37□□□□□ -0.11
LSM1-203ENST00000520755 CAMKMTQ7Z624 323 aa14.37□□□□□ -0.11
LSM1-203ENST00000520755 TICAM1Q8IUC6 712 aa14.37□□□□□ -0.11
LSM1-203ENST00000520755 METTL21AQ8WXB1 218 aa14.37□□□□□ -0.11
LSM1-203ENST00000520755 TESCQ96BS2 214 aa14.37□□□□□ -0.11
LSM1-203ENST00000520755 MESP1Q9BRJ9 268 aa14.37□□□□□ -0.11
LSM1-203ENST00000520755 FAIM2Q9BWQ8 316 aa14.37□□□□□ -0.11
LSM1-203ENST00000520755 RPF2Q9H7B2 306 aaKnown RBP14.37□□□□□ -0.11
LSM1-203ENST00000520755 SLAMF7Q9NQ25 335 aa14.37□□□□□ -0.11
LSM1-203ENST00000520755 PRTFDC1Q9NRG1 225 aa14.37□□□□□ -0.11
LSM1-203ENST00000520755 MRPS33Q9Y291 106 aaKnown RBP14.37□□□□□ -0.11
LSM1-203ENST00000520755 HS3ST3B1Q9Y662 390 aa14.37□□□□□ -0.11
LSM1-203ENST00000520755 ASPDHA6ND91 283 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 CAPN14A8MX76 684 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 CCDC22O60826 627 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 LDB3O75112 727 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 ALOX12BO75342 701 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 GUCY1B2O75343 617 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 SLC22A3O75751 556 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 DCTN3O75935 186 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 C8orf89P0DMQ9 161 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 LAMP1P11279 417 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 DRD2P14416 443 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 CAPN3P20807 821 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 CLNS1AP54105 237 aaKnown RBP14.36□□□□□ -0.11
LSM1-203ENST00000520755 WNT3P56703 355 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 BTG2P78543 158 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 RHAGQ02094 409 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 EEF1A2Q05639 463 aaKnown RBP14.36□□□□□ -0.11
LSM1-203ENST00000520755 SLC13A2Q13183 592 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 ATP1A4Q13733 1029 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 RPS6KA2Q15349 733 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 COL28A1Q2UY09 1125 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 DEFB109BQ30KR1 87 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 ZNF750Q32MQ0 723 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 CRTC2Q53ET0 693 aaPredicted RBP14.36□□□□□ -0.11
LSM1-203ENST00000520755 AGKQ53H12 422 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 FAM91A1Q658Y4 838 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 MRGPREQ86SM8 312 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 FAM9CQ8IZT9 166 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 FITM2Q8N6M3 262 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 TSLPQ969D9 159 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 ANKRD9Q96BM1 317 aaPredicted RBP14.36□□□□□ -0.11
LSM1-203ENST00000520755 C8orf44Q96CB5 159 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 ERP27Q96DN0 273 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 MTERF3Q96E29 417 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 CNRIP1Q96F85 164 aaPredicted RBP14.36□□□□□ -0.11
LSM1-203ENST00000520755 PTCHD1Q96NR3 888 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 MIEF1Q9NQG6 463 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 PRDM9Q9NQV7 894 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 EHD3Q9NZN3 535 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 CCDC167Q9P0B6 97 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.36□□□□□ -0.11
LSM1-203ENST00000520755 MAN2B2Q9Y2E5 1009 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 CAPN7Q9Y6W3 813 aa14.36□□□□□ -0.11
LSM1-203ENST00000520755 PTPRQQ9UMZ3 2332 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 IGKV3D-11A0A0A0MRZ8 115 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 FAM234BA2RU67 622 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 PEX12O00623 359 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 CLDN4O14493 209 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 SOCS6O14544 535 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 SCN2BO60939 215 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 COX7A2P14406 83 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 MAOAP21397 527 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 TLX1P31314 330 aaPredicted RBP14.35□□□□□ -0.11
LSM1-203ENST00000520755 DGKQP52824 942 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 IGLV3-21P80748 117 aaPredicted RBP14.35□□□□□ -0.11
LSM1-203ENST00000520755 ID2Q02363 134 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 FOLH1Q04609 750 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 NSDHLQ15738 373 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 CEBPEQ15744 281 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 FAM174BQ3ZCQ3 159 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 BLOC1S3Q6QNY0 202 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 QSOX2Q6ZRP7 698 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 LANCL3Q6ZV70 420 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 OR4N5Q8IXE1 308 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 ZNF595Q8IYB9 648 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 PLPP5Q8NEB5 264 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 THAP4Q8WY91 577 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 CIDECQ96AQ7 238 aaPredicted RBP14.35□□□□□ -0.11
LSM1-203ENST00000520755 EXOSC8Q96B26 276 aaKnown RBP14.35□□□□□ -0.11
LSM1-203ENST00000520755 PPCDCQ96CD2 204 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 COQ8BQ96D53 544 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 ZNF681Q96N22 645 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 NECTIN3Q9NQS3 549 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 P4HTMQ9NXG6 502 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 TAS2R7Q9NYW3 318 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 UTS2RQ9UKP6 389 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 POLHQ9Y253 713 aa14.35□□□□□ -0.11
LSM1-203ENST00000520755 IGHV3-20A0A0C4DH32 117 aa14.34□□□□□ -0.11
LSM1-203ENST00000520755 ARGFXA6NJG6 315 aa14.34□□□□□ -0.11
LSM1-203ENST00000520755 NR5A2O00482 541 aa14.34□□□□□ -0.11
LSM1-203ENST00000520755 SLC22A2O15244 555 aa14.34□□□□□ -0.11
LSM1-203ENST00000520755 CYC1P08574 325 aa14.34□□□□□ -0.11
LSM1-203ENST00000520755 PCSK2P16519 638 aa14.34□□□□□ -0.11
LSM1-203ENST00000520755 EFNA1P20827 205 aaPredicted RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms