RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 IGFL3Q6UXB1 125 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 ISLR2Q6UXK2 745 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 IKBIPQ70UQ0 350 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 OR2T11Q8NH01 316 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 BRIX1Q8TDN6 353 aaKnown RBP13.33□□□□□ -0.28
NUP54-216ENST00000514901 ELP5Q8TE02 316 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 PTPMT1Q8WUK0 201 aaPredicted RBP13.33□□□□□ -0.28
NUP54-216ENST00000514901 PSMF1Q92530 271 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 ZNF75CPQ92670 426 aaPredicted RBP13.33□□□□□ -0.28
NUP54-216ENST00000514901 C19orf60Q96EN9 201 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 VMP1Q96GC9 406 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 ART5Q96L15 291 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 FCRL1Q96LA6 429 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 BBC3Q96PG8 261 aaPredicted RBP13.33□□□□□ -0.28
NUP54-216ENST00000514901 EBPLQ9BY08 206 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 KCNK13Q9HB14 408 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 ZNF71Q9NQZ8 489 aaPredicted RBP13.33□□□□□ -0.28
NUP54-216ENST00000514901 EHD3Q9NZN3 535 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 CES1P1Q9UKY3 287 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 TP53TG5Q9Y2B4 290 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 PTGDR2Q9Y5Y4 395 aa13.33□□□□□ -0.28
NUP54-216ENST00000514901 KALRNO60229 2985 aa13.32□□□□□ -0.28
NUP54-216ENST00000514901 C17orf105B2RV13 164 aa13.32□□□□□ -0.28
NUP54-216ENST00000514901 OR10H2O60403 315 aa13.32□□□□□ -0.28
NUP54-216ENST00000514901 VPS4BO75351 444 aa13.32□□□□□ -0.28
NUP54-216ENST00000514901 SKAP2O75563 359 aaPredicted RBP13.32□□□□□ -0.28
NUP54-216ENST00000514901 PRKRAO75569 313 aaKnown RBP13.32□□□□□ -0.28
NUP54-216ENST00000514901 IL3P08700 152 aa13.32□□□□□ -0.28
NUP54-216ENST00000514901 ITGAMP11215 1152 aa13.32□□□□□ -0.28
NUP54-216ENST00000514901 CSNK2A2P19784 350 aaPredicted RBP13.32□□□□□ -0.28
NUP54-216ENST00000514901 ALDH9A1P49189 494 aa13.32□□□□□ -0.28
NUP54-216ENST00000514901 RAPSNQ13702 412 aa13.32□□□□□ -0.28
NUP54-216ENST00000514901 SMU1Q2TAY7 513 aa13.32□□□□□ -0.28
NUP54-216ENST00000514901 RFTN2Q52LD8 501 aaPredicted RBP13.32□□□□□ -0.28
NUP54-216ENST00000514901 IGFL2Q6UWQ7 119 aa13.32□□□□□ -0.28
NUP54-216ENST00000514901 LGI4Q8N135 537 aa13.32□□□□□ -0.28
NUP54-216ENST00000514901 SLC5A8Q8N695 610 aa13.32□□□□□ -0.28
NUP54-216ENST00000514901 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.32□□□□□ -0.28
NUP54-216ENST00000514901 DYDC1Q8WWB3 177 aa13.32□□□□□ -0.28
NUP54-216ENST00000514901 ZNF354BQ96LW1 612 aa13.32□□□□□ -0.28
NUP54-216ENST00000514901 EPS8L2Q9H6S3 715 aa13.32□□□□□ -0.28
NUP54-216ENST00000514901 MYNNQ9NPC7 610 aa13.32□□□□□ -0.28
NUP54-216ENST00000514901 MED4Q9NPJ6 270 aa13.32□□□□□ -0.28
NUP54-216ENST00000514901 INTS9Q9NV88 658 aaKnown RBP13.32□□□□□ -0.28
NUP54-216ENST00000514901 POLR3HQ9Y535 204 aaPredicted RBP13.32□□□□□ -0.28
NUP54-216ENST00000514901 ZNF780BQ9Y6R6 833 aa13.32□□□□□ -0.28
NUP54-216ENST00000514901 WASHC1A8K0Z3 465 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 A8MUI8 341 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 CELA2AP08217 269 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 CPMP14384 443 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 PORP16435 677 aaPredicted RBP13.31□□□□□ -0.28
NUP54-216ENST00000514901 DDX5P17844 614 aaKnown RBP13.31□□□□□ -0.28
NUP54-216ENST00000514901 NR1D1P20393 614 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 DDCP20711 480 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 SOX11P35716 441 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 ASMTP46597 345 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 GPR143P51810 404 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 HK2P52789 917 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 RPL38P63173 70 aaKnown RBP13.31□□□□□ -0.28
NUP54-216ENST00000514901 OCRLQ01968 901 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 C2orf80Q0P641 193 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 MAD2L1Q13257 205 aaPredicted RBP13.31□□□□□ -0.28
NUP54-216ENST00000514901 MFAP5Q13361 173 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 MEP1AQ16819 746 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 SPRED3Q2MJR0 410 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 GALNTL6Q49A17 601 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 ABHD17BQ5VST6 288 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 FAM71E1Q6IPT2 247 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 LRRC34Q8IZ02 419 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 ZADH2Q8N4Q0 377 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 SIRT6Q8N6T7 355 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 TEX19Q8NA77 164 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 APCDD1LQ8NCL9 501 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 OR1N1Q8NGS0 311 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 LRRC8CQ8TDW0 803 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 RIT1Q92963 219 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 UCN3Q969E3 161 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 KLHL29Q96CT2 875 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 TUBGCP3Q96CW5 907 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 SENP5Q96HI0 755 aaPredicted RBP13.31□□□□□ -0.28
NUP54-216ENST00000514901 C3orf30Q96M34 536 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 DEFB126Q9BYW3 111 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 SEMA4CQ9C0C4 833 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 GIMAP4Q9NUV9 329 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 PNPOQ9NVS9 261 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.31□□□□□ -0.28
NUP54-216ENST00000514901 TAS2R7Q9NYW3 318 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 STMN3Q9NZ72 180 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 ABI3Q9P2A4 366 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 PTGFRNQ9P2B2 879 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 HEY2Q9UBP5 337 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 COPS7AQ9UBW8 275 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 UTS2RQ9UKP6 389 aa13.31□□□□□ -0.28
NUP54-216ENST00000514901 MYOCOSA0A1B0GUC4 107 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 TRPC5OSA6NMA1 111 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 HDAC3O15379 428 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 PEX11AO75192 247 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 ERAL1O75616 437 aaKnown RBP13.3□□□□□ -0.28
NUP54-216ENST00000514901 ZFAND5O76080 213 aa13.3□□□□□ -0.28
NUP54-216ENST00000514901 DDAH2O95865 285 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms