RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 LAIR2Q6ISS4 152 aa11.52□□□□□ -0.57
HDAC6-230ENST00000488543 ZNF773Q6PK81 442 aa11.52□□□□□ -0.57
HDAC6-230ENST00000488543 ARL14Q8N4G2 192 aa11.52□□□□□ -0.57
HDAC6-230ENST00000488543 SLC15A4Q8N697 577 aa11.52□□□□□ -0.57
HDAC6-230ENST00000488543 OR13F1Q8NGS4 319 aa11.52□□□□□ -0.57
HDAC6-230ENST00000488543 OR2I1PQ8NGU4 316 aa11.52□□□□□ -0.57
HDAC6-230ENST00000488543 C17orf62Q9BQA9 187 aa11.52□□□□□ -0.57
HDAC6-230ENST00000488543 RHNO1Q9BSD3 238 aa11.52□□□□□ -0.57
HDAC6-230ENST00000488543 IL21RQ9HBE5 538 aa11.52□□□□□ -0.57
HDAC6-230ENST00000488543 PAK1IP1Q9NWT1 392 aaPredicted RBP11.52□□□□□ -0.57
HDAC6-230ENST00000488543 TEX10Q9NXF1 929 aaPredicted RBP11.52□□□□□ -0.57
HDAC6-230ENST00000488543 ACTR10Q9NZ32 417 aa11.52□□□□□ -0.57
HDAC6-230ENST00000488543 ZNF282Q9UDV7 671 aaPredicted RBP11.52□□□□□ -0.57
HDAC6-230ENST00000488543 ASXL3Q9C0F0 2248 aa11.52□□□□□ -0.57
HDAC6-230ENST00000488543 GSAPA4D1B5 854 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 OR2A25A4D2G3 310 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 LMO7DNF2Z398 122 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 GNGT2O14610 69 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 TNFSF14O43557 240 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 XPNPEP2O43895 674 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 SP9P0CG40 484 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 GNSP15586 552 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 BMXP51813 675 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 MVDP53602 400 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 PLA2G16P53816 162 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 KCNAB2Q13303 367 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 ANGPT1Q15389 498 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 TOR1AIP1Q5JTV8 583 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 ZCCHC8Q6NZY4 707 aaKnown RBP11.51□□□□□ -0.57
HDAC6-230ENST00000488543 VN1R4Q7Z5H5 301 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 GKN2Q86XP6 184 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 GATAD2AQ86YP4 633 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 CNIH3Q8TBE1 160 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 UCN3Q969E3 161 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 FCRL4Q96PJ5 515 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 SLAMF7Q9NQ25 335 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 PRDM7Q9NQW5 492 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 DCAF13Q9NV06 445 aaKnown RBP11.51□□□□□ -0.57
HDAC6-230ENST00000488543 GPATCH2Q9NW75 528 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 FAM118AQ9NWS6 357 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 WARS2Q9UGM6 360 aaKnown RBP11.51□□□□□ -0.57
HDAC6-230ENST00000488543 FBXO4Q9UKT5 387 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 TMEM131Q92545 1883 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 OR5K4A6NMS3 321 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 GMNNO75496 209 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 CFIP05156 583 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 ABCB1P08183 1280 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-230ENST00000488543 CD47Q08722 323 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 AQP6Q13520 282 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 SIM2Q14190 667 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-230ENST00000488543 SPCS2Q15005 226 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 TEAD4Q15561 434 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 VMACQ2NL98 169 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 FCRL6Q6DN72 434 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 ABHD17CQ6PCB6 329 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 SMYD1Q8NB12 490 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 CHDHQ8NE62 594 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-230ENST00000488543 RSC1A1Q92681 617 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 SLC22A18Q96BI1 424 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 ZNF764Q96H86 408 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-230ENST00000488543 ELF4Q99607 663 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-230ENST00000488543 DOK1Q99704 481 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 DPH2Q9BQC3 489 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-230ENST00000488543 CCDC90BQ9GZT6 254 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 SMOC1Q9H4F8 434 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 MIEF1Q9NQG6 463 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 EVA1BQ9NVM1 165 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 HRASLS2Q9NWW9 162 aa11.51□□□□□ -0.57
HDAC6-230ENST00000488543 A0A1W2PRB8 838 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 INMTO95050 263 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 NUDT7P0C024 238 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 GIMD1P0DJR0 217 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 PPIBP23284 216 aaKnown RBP11.5□□□□□ -0.57
HDAC6-230ENST00000488543 CRHBPP24387 322 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 SSR2P43308 183 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 GSTM5P46439 218 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 LSSP48449 732 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 LSM3P62310 102 aaKnown RBP11.5□□□□□ -0.57
HDAC6-230ENST00000488543 TRA2BP62995 288 aaKnown RBP11.5□□□□□ -0.57
HDAC6-230ENST00000488543 RGNQ15493 299 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 MRM1Q6IN84 353 aaKnown RBP11.5□□□□□ -0.57
HDAC6-230ENST00000488543 FAM180BQ6P0A1 224 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 FBXO42Q6P3S6 717 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 Q6ZNX1 250 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 ZDHHC13Q8IUH4 622 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 TBC1D19Q8N5T2 526 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 SDCCAG3Q96C92 435 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 PLEKHA8Q96JA3 519 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 FAM221BA6H8Z2 402 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 ZW10O43264 779 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 ERI3O43414 337 aaKnown RBP11.5□□□□□ -0.57
HDAC6-230ENST00000488543 E2F6O75461 281 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 CPNE6O95741 557 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 SERPINA1P01009 418 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 PVRP15151 417 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 CCNA2P20248 432 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 MAGP20916 626 aa11.5□□□□□ -0.57
HDAC6-230ENST00000488543 FRKP42685 505 aaPredicted RBP11.5□□□□□ -0.57
HDAC6-230ENST00000488543 RPS15AP62244 130 aaKnown RBP11.5□□□□□ -0.57
HDAC6-230ENST00000488543 SNRPNP63162 240 aaKnown RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms