RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 K7EQD1 137 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 TLR4O00206 839 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 TRAFD1O14545 582 aaPredicted RBP2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 HAT1O14929 419 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 B4GAT1O43505 415 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 ZBTB14O43829 449 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 GMNNO75496 209 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 PRDM1O75626 825 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 BCAS2O75934 225 aaPredicted RBP2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 NXPH4O95158 308 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 CXCL14O95715 111 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 FGF19O95750 216 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 ABHD2P08910 425 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 GSTA2P09210 222 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 ANPEPP15144 967 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 STMN1P16949 149 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 AOC1P19801 751 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 CCR4P51679 360 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 MFGE8Q08431 387 aaPredicted RBP2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 MSLNQ13421 630 aaPredicted RBP2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 CAPN13Q6MZZ7 669 aaPredicted RBP2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 B3GLCTQ6Y288 498 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 C3P1Q6ZMU1 363 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 CACUL1Q86Y37 369 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 PARP8Q8N3A8 854 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 CCDC197Q8NCU1 140 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 NEK11Q8NG66 645 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 OR9Q2Q8NGE9 314 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 OR10G7Q8NGN6 311 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 OR4A16Q8NH70 328 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 GANCQ8TET4 914 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 EEF2KMTQ96G04 330 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 FAM213AQ9BRX8 229 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 NUSAP1Q9BXS6 441 aaKnown RBP2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 MARCH7Q9H992 704 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 S100A14Q9HCY8 104 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 KCNMB3Q9NPA1 279 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 IL1RAPQ9NPH3 570 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 PRMT8Q9NR22 394 aaPredicted RBP2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 DDX28Q9NUL7 540 aaKnown RBP2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 NLGN3Q9NZ94 848 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 THAP10Q9P2Z0 257 aaPredicted RBP2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 KLK11Q9UBX7 282 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 MOSPD1Q9UJG1 213 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 VSIG4Q9Y279 399 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 SH3GLB1Q9Y371 365 aa2.38□□□□□ -2.03
CCDC88A-212ENST00000474059 IGHV3-20A0A0C4DH32 117 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 IGHV3-38A0A0C4DH36 116 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 A0A0U1RQG5 324 aaPredicted RBP2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 SLC28A1O00337 649 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 CCSO14618 274 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 PHF1O43189 567 aaPredicted RBP2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 TNFSF12O43508 249 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 ZNF354AO60765 605 aaPredicted RBP2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 MTRF1O75570 445 aaKnown RBP2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 MMP10P09238 476 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 AREGP15514 252 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 FERP16591 822 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 GPX3P22352 226 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 DRD3P35462 400 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 FHITP49789 147 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 CNN1P51911 297 aaKnown RBP2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 KCNK10P57789 538 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 ERVK-16P61578 105 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 LYZP61626 148 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 GALK2Q01415 458 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 MEF2DQ14814 521 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 HEPACAMQ14CZ8 416 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 KRT31Q15323 416 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 WSCD2Q2TBF2 565 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 EPC2Q52LR7 807 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 ETFRF1Q6IPR1 90 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 PHC2Q8IXK0 858 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 C11orf42Q8N5U0 333 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 GPATCH11Q8N954 259 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 OR52B6Q8NGF0 335 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 OR8H1Q8NGG4 311 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 OR4L1Q8NH43 312 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 URGCPQ8TCY9 931 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 LIPHQ8WWY8 451 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 CCDC47Q96A33 483 aaKnown RBP2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 SLCO4A1Q96BD0 722 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 DTD2Q96FN9 168 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 PCED1BQ96HM7 432 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 CXorf58Q96LI9 332 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 NAP1L3Q99457 506 aaPredicted RBP2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 S1PR3Q99500 378 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 AGPAT1Q99943 283 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 PINK1Q9BXM7 581 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 CARD9Q9H257 536 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 TMEM245Q9H330 911 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 DPEP3Q9H4B8 488 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 KCNK13Q9HB14 408 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 PIGVQ9NUD9 493 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 MED17Q9NVC6 651 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 UBQLN2Q9UHD9 624 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 TEKT2Q9UIF3 430 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 TRMT6Q9UJA5 497 aaKnown RBP2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 STYXL1Q9Y6J8 313 aa2.37□□□□□ -2.03
CCDC88A-212ENST00000474059 FGD5Q6ZNL6 1462 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms