RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 OPN5Q6U736 354 aa17.37■□□□□ 0.37
CCDC88B-206ENST00000473405 RGS9BPQ6ZS82 235 aa17.37■□□□□ 0.37
CCDC88B-206ENST00000473405 GK5Q6ZS86 529 aa17.37■□□□□ 0.37
CCDC88B-206ENST00000473405 RELL1Q8IUW5 271 aa17.37■□□□□ 0.37
CCDC88B-206ENST00000473405 PLD6Q8N2A8 252 aaKnown RBP17.37■□□□□ 0.37
CCDC88B-206ENST00000473405 L3MBTL4Q8NA19 623 aa17.37■□□□□ 0.37
CCDC88B-206ENST00000473405 C7orf57Q8NEG2 295 aa17.37■□□□□ 0.37
CCDC88B-206ENST00000473405 ISL2Q96A47 359 aa17.37■□□□□ 0.37
CCDC88B-206ENST00000473405 LURAP1Q96LR2 239 aa17.37■□□□□ 0.37
CCDC88B-206ENST00000473405 CENPKQ9BS16 269 aa17.37■□□□□ 0.37
CCDC88B-206ENST00000473405 FUT8Q9BYC5 575 aa17.37■□□□□ 0.37
CCDC88B-206ENST00000473405 TP63Q9H3D4 680 aaPredicted RBP17.37■□□□□ 0.37
CCDC88B-206ENST00000473405 IPPKQ9H8X2 491 aa17.37■□□□□ 0.37
CCDC88B-206ENST00000473405 SH2D2AQ9NP31 389 aa17.37■□□□□ 0.37
CCDC88B-206ENST00000473405 ZNF358Q9NW07 568 aa17.37■□□□□ 0.37
CCDC88B-206ENST00000473405 CPSF2Q9P2I0 782 aaKnown RBP17.37■□□□□ 0.37
CCDC88B-206ENST00000473405 RNF11Q9Y3C5 154 aa17.37■□□□□ 0.37
CCDC88B-206ENST00000473405 ASB4Q9Y574 426 aa17.37■□□□□ 0.37
CCDC88B-206ENST00000473405 A0A1W2PR48 441 aa17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 OR7A17O14581 309 aa17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 NADKO95544 446 aaPredicted RBP17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 ALOX15P16050 662 aaPredicted RBP17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 CNR1P21554 472 aa17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 PTX3P26022 381 aaPredicted RBP17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 TYK2P29597 1187 aa17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 PHBP35232 272 aa17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 DNASE1L1P49184 302 aa17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 NEK2P51955 445 aa17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 ZNF791Q3KP31 576 aaPredicted RBP17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 NDUFAF5Q5TEU4 345 aa17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 METTL2BQ6P1Q9 378 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 LYPD8Q6UX82 237 aa17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 FAM47EQ6ZV65 393 aa17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 SLC22A16Q86VW1 577 aa17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 ST13P4Q8IZP2 240 aaPredicted RBP17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 TMEM251Q8N6I4 163 aa17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 OR52B6Q8NGF0 335 aa17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 CA5BP1Q8WTZ4 195 aa17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 REPS1Q96D71 796 aa17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 TREX2Q9BQ50 279 aaPredicted RBP17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 DDX31Q9H8H2 851 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 SACM1LQ9NTJ5 587 aa17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 TNPO3Q9Y5L0 923 aaKnown RBP17.36■□□□□ 0.37
CCDC88B-206ENST00000473405 GLOD5A6NK44 160 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 IGHG3P01860 377 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 CLPSP04118 112 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 CELA3AP09093 270 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 FAM58BPP0C7Q3 252 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 NR2F6P10588 404 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 ELAVL4P26378 380 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 TLX1P31314 330 aaPredicted RBP17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 BUD31P41223 144 aaPredicted RBP17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 MAGEA5P43359 124 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 PIK3CGP48736 1102 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 BIKQ13323 160 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 HYAL4Q2M3T9 481 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 SPRED3Q2MJR0 410 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 CEP128Q6ZU80 1094 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 PTGR2Q8N8N7 351 aaPredicted RBP17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 DOK4Q8TEW6 326 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 SLC44A1Q8WWI5 657 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 RBM18Q96H35 190 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 C16orf45Q96MC5 204 aaPredicted RBP17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 CDK15Q96Q40 435 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 SPOCK3Q9BQ16 436 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 ENKD1Q9H0I2 346 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 VPS11Q9H270 941 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 CDC42EP4Q9H3Q1 356 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 IL1RL2Q9HB29 575 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 SEMA4BQ9NPR2 832 aaPredicted RBP17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 PNPLA3Q9NST1 481 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 LYARQ9NX58 379 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 TUBA8Q9NY65 449 aaPredicted RBP17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 PSD3Q9NYI0 1048 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 COQ3Q9NZJ6 369 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 SETD2Q9BYW2 2564 aaPredicted RBP17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 SPG11Q96JI7 2443 aa17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 ANKHD1Q8IWZ3 2542 aaKnown RBP17.35■□□□□ 0.37
CCDC88B-206ENST00000473405 FOXE1O00358 373 aaPredicted RBP17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 ACSL3O95573 720 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 GPR75O95800 540 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 AIFM1O95831 613 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 P04436 131 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 SLC37A1P57057 533 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 HERVK_113P63132 956 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 ERVK-8P63133 956 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 PHEXP78562 749 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 TRAF3Q13114 568 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 ARHGAP21Q5T5U3 1957 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 PAOXQ6QHF9 649 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 NUDT13Q86X67 352 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 FAM109AQ8N4B1 249 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 UCN3Q969E3 161 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 SPACA9Q96E40 222 aaPredicted RBP17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 ART5Q96L15 291 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 NSUN5Q96P11 429 aaKnown RBP17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 CNPPD1Q9BV87 410 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 ERVK-6Q9BXR3 956 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 WWTR1Q9GZV5 400 aa17.34■□□□□ 0.37
CCDC88B-206ENST00000473405 NOL11Q9H8H0 719 aaKnown RBP17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms