RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	C11orf24	Q96F05	449 aa	Predicted RBP	10	□□□□□ -0.81
UBR4-208	ENST00000459947	APIP	Q96GX9	242 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	SIKE1	Q9BRV8	207 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	SORBS1	Q9BX66	1292 aa	Known RBP	10	□□□□□ -0.81
UBR4-208	ENST00000459947	MRGBP	Q9NV56	204 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	DLGAP4	Q9Y2H0	992 aa		10	□□□□□ -0.81
UBR4-208	ENST00000459947	SCN3A	Q9NY46	2000 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947		A0A1B0GTL3	188 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	PIP5K1B	O14986	540 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	FGF17	O60258	216 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	COQ9	O75208	318 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	WDR4	P57081	412 aa	Known RBP	9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	TLR1	Q15399	786 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	UGT3A2	Q3SY77	523 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	HLA-DQA1	Q5Y7H0	255 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	CLEC6A	Q6EIG7	209 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	RNF111	Q6ZNA4	994 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	ATG14	Q6ZNE5	492 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	SPATA19	Q7Z5L4	167 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	CLNK	Q7Z7G1	428 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	RNF175	Q8N4F7	328 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	ARL8A	Q96BM9	186 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	C7orf26	Q96N11	449 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	BBS4	Q96RK4	519 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	NOP53	Q9NZM5	478 aa	Known RBP	9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	YARS2	Q9Y2Z4	477 aa	Known RBP	9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	SNN	O75324	88 aa	Predicted RBP	9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	ATP1B1	P05026	303 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	MPI	P34949	423 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	XK	P51811	444 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	FOXA1	P55317	472 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	EMX2	Q04743	252 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	BTK	Q06187	659 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	C2orf80	Q0P641	193 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	LRRC74A	Q0VAA2	488 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	FAM71E1	Q6IPT2	247 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	BRIX1	Q8TDN6	353 aa	Known RBP	9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	RIT1	Q92963	219 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	NCLN	Q969V3	563 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	UTP23	Q9BRU9	249 aa	Known RBP	9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	NUDT9	Q9BW91	350 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	FIS1	Q9Y3D6	152 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947		A6NL46	340 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	HDAC3	O15379	428 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	TGDS	O95455	350 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	IL3	P08700	152 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	LBP	P18428	481 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	TRHR	P34981	398 aa	Predicted RBP	9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	CLNS1A	P54105	237 aa	Known RBP	9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	C21orf58	P58505	322 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	RPL38	P63173	70 aa	Known RBP	9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	ARG2	P78540	354 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	MAP4K2	Q12851	820 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	DPY19L1	Q2PZI1	675 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	C18orf63	Q68DL7	685 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	OPN5	Q6U736	354 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	TAGAP	Q8N103	731 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	C17orf47	Q8NEP4	570 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	MGARP	Q8TDB4	240 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	TUBGCP3	Q96CW5	907 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	C5orf34	Q96MH7	638 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	TEX10	Q9NXF1	929 aa	Predicted RBP	9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	UTS2R	Q9UKP6	389 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	CCL27	Q9Y4X3	112 aa		9.99	□□□□□ -0.81
UBR4-208	ENST00000459947	TRBV11-1	A0A0K0K1C0	115 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	ITGAM	P11215	1152 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	MLF1	P58340	268 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	OGFOD2	Q6N063	350 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	WDR75	Q8IWA0	830 aa	Known RBP	9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	TMEM178A	Q8NBL3	297 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	SLC2A12	Q8TD20	617 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	TP53INP1	Q96A56	240 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	REEP4	Q9H6H4	257 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	SLC35C2	Q9NQQ7	365 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	ZDHHC2	Q9UIJ5	367 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	OR5H15	A6NDH6	313 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	LSM1	O15116	133 aa	Known RBP	9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	CD46	P15529	392 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	NR1D1	P20393	614 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	SERPINB3	P29508	390 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	ALDH9A1	P49189	494 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	TMED10	P49755	219 aa	Known RBP	9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	ERVK-8	P63133	956 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	SNRPN	P63162	240 aa	Known RBP	9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	RAE1	P78406	368 aa	Known RBP	9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	MRPS22	P82650	360 aa	Known RBP	9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	MPP2	Q14168	576 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	ACER2	Q5QJU3	275 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	FAM69B	Q5VUD6	431 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	RGS9BP	Q6ZS82	235 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947		Q6ZS92	163 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	POGLUT1	Q8NBL1	392 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	TMEM52	Q8NDY8	209 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	TRIM45	Q9H8W5	580 aa	Predicted RBP	9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	CES1P1	Q9UKY3	287 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	BPTF	Q12830	3046 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	FRYL	O94915	3013 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947		B8ZZF3	427 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	PRAMEF2	O60811	474 aa		9.98	□□□□□ -0.81
UBR4-208	ENST00000459947	DNAJB6	O75190	326 aa		9.98	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms