RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 GTF2IRD2Q86UP8 949 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 OR10Z1Q8NGY1 313 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 HERVK_113Q902F9 699 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 TCEAL2Q9H3H9 227 aaPredicted RBP12.76□□□□□ -0.37
USP40-208ENST00000450966 IPPKQ9H8X2 491 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 TLR9Q9NR96 1032 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 COL2A1P02458 1487 aaPredicted RBP12.76□□□□□ -0.37
USP40-208ENST00000450966 LOC105369274A0A096LPK9 316 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 A0A1W2PQ45 241 aaPredicted RBP12.76□□□□□ -0.37
USP40-208ENST00000450966 A0A1W2PQY0 241 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 K7EPK0 472 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 SCO1O75880 301 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 OR4F21O95013 312 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 GOT1P17174 413 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 CORO1AP31146 461 aaKnown RBP12.76□□□□□ -0.37
USP40-208ENST00000450966 TNFSF9P41273 254 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 SLC22A25Q6T423 547 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 PARGQ86W56 976 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 OR4N4Q8N0Y3 316 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 FAM71E2Q8N5Q1 922 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 CELF5Q8N6W0 485 aaKnown RBP12.76□□□□□ -0.37
USP40-208ENST00000450966 SUMF2Q8NBJ7 301 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 TSTD1Q8NFU3 115 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 PAQR8Q8TEZ7 354 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 HSH2DQ96JZ2 352 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 SLC6A16Q9GZN6 736 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 SLAMF7Q9NQ25 335 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 KLHL9Q9P2J3 617 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 TEX264Q9Y6I9 313 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 A0A096LPI6 279 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 TLX2O43763 284 aaPredicted RBP12.76□□□□□ -0.37
USP40-208ENST00000450966 FMO6PO60774 539 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 SNNO75324 88 aaPredicted RBP12.76□□□□□ -0.37
USP40-208ENST00000450966 POP4O95707 220 aaKnown RBP12.76□□□□□ -0.37
USP40-208ENST00000450966 ARSBP15848 533 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 ZP3P21754 424 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 RSU1Q15404 277 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 CGB2Q6NT52 195 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 ZNF852Q6ZMS4 543 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 AQP11Q8NBQ7 271 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 OR52H1Q8NGJ2 320 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 MARC2Q969Z3 335 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 AZIN2Q96A70 460 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 FCRL2Q96LA5 508 aaPredicted RBP12.76□□□□□ -0.37
USP40-208ENST00000450966 DUSP22Q9NRW4 184 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 KIF25Q9UIL4 384 aa12.76□□□□□ -0.37
USP40-208ENST00000450966 HOXD8P13378 290 aaPredicted RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 IDUAP35475 653 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 HSPA7P48741 367 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 DGKGP49619 791 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 VSX2P58304 361 aaPredicted RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 EMX1Q04741 257 aaPredicted RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 ARHGAP1Q07960 439 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 SDHAF4Q5VUM1 108 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 SFRP4Q6FHJ7 346 aaPredicted RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 C17orf107Q6ZR85 190 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 NAA40Q86UY6 237 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 ARHGAP12Q8IWW6 846 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 OR2A12Q8NGT7 310 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 PAPOLGQ9BWT3 736 aaKnown RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 DNAJC27Q9NZQ0 273 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 SEC14L2O76054 403 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 DBIP07108 87 aaKnown RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 MC4RP32245 332 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 XKR4Q5GH76 650 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 FAM111BQ6SJ93 734 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 ZFP82Q8N141 532 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 OR5T1Q8NG75 326 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 ZNF296Q8WUU4 475 aaPredicted RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 TMEM74Q96NL1 305 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 PRRG4Q9BZD6 226 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 NARFLQ9H6Q4 476 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 OR6C6A6NF89 314 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 SLC38A8A6NNN8 435 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 CXorf49A8MYA2 514 aaPredicted RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 SLC33A1O00400 549 aaPredicted RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 UGT2B7P16662 529 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 RBMXP38159 391 aaKnown RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 RPS19P39019 145 aaKnown RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 CXCR3P49682 368 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 IRF9Q00978 393 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 C17orf64Q86WR6 236 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 RASGRP3Q8IV61 690 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 PINK1Q9BXM7 581 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 ELOVL2Q9NXB9 296 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 PCDHB1Q9Y5F3 818 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 SOCS7O14512 581 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 SMAD9O15198 467 aaKnown RBP12.75□□□□□ -0.37
USP40-208ENST00000450966 SCN2BO60939 215 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 TACR2P21452 398 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 EDNRAP25101 427 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 TNFRSF17Q02223 184 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 GTF2H2Q13888 395 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 GTF2H2CQ6P1K8 395 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 SLC39A4Q6P5W5 647 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 ZER1Q7Z7L7 766 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 OR9I1Q8NGQ6 314 aa12.75□□□□□ -0.37
USP40-208ENST00000450966 MYOCQ99972 504 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms