RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 TCHHL1Q5QJ38 904 aaPredicted RBP14.13□□□□□ -0.15
LIMS3-201ENST00000437679 ZNF324BQ6AW86 544 aaPredicted RBP14.13□□□□□ -0.15
LIMS3-201ENST00000437679 COMMD6Q7Z4G1 85 aa14.13□□□□□ -0.15
LIMS3-201ENST00000437679 GALNTL5Q7Z4T8 443 aa14.13□□□□□ -0.15
LIMS3-201ENST00000437679 GBP7Q8N8V2 638 aaPredicted RBP14.13□□□□□ -0.15
LIMS3-201ENST00000437679 OR5L2Q8NGL0 311 aa14.13□□□□□ -0.15
LIMS3-201ENST00000437679 OR8K3Q8NH51 312 aa14.13□□□□□ -0.15
LIMS3-201ENST00000437679 PPWD1Q96BP3 646 aaKnown RBP14.13□□□□□ -0.15
LIMS3-201ENST00000437679 HBEGFQ99075 208 aa14.13□□□□□ -0.15
LIMS3-201ENST00000437679 HES7Q9BYE0 225 aa14.13□□□□□ -0.15
LIMS3-201ENST00000437679 MID1IP1Q9NPA3 183 aa14.13□□□□□ -0.15
LIMS3-201ENST00000437679 TEX10Q9NXF1 929 aaPredicted RBP14.13□□□□□ -0.15
LIMS3-201ENST00000437679 MYOTQ9UBF9 498 aa14.13□□□□□ -0.15
LIMS3-201ENST00000437679 WASHC1A8K0Z3 465 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 CRCPO75575 148 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 OR2J2O76002 312 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 PIK3R1P27986 724 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 NAGLUP54802 743 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 RNF4P78317 190 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 PMP22Q01453 160 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 GALNT1Q10472 559 aaPredicted RBP14.12□□□□□ -0.15
LIMS3-201ENST00000437679 TBL3Q12788 808 aaKnown RBP14.12□□□□□ -0.15
LIMS3-201ENST00000437679 NDUFAF5Q5TEU4 345 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 TRABD2AQ86V40 505 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 CYP4Z2PQ8N1L4 340 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 C1orf52Q8N6N3 182 aaKnown RBP14.12□□□□□ -0.15
LIMS3-201ENST00000437679 ZNF321PQ8N8H1 164 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 ZNF721Q8TF20 911 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 AGAP11Q8TF27 550 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 SREK1Q8WXA9 508 aaKnown RBP14.12□□□□□ -0.15
LIMS3-201ENST00000437679 ASB15Q8WXK1 588 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 RIT1Q92963 219 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 SENP5Q96HI0 755 aaPredicted RBP14.12□□□□□ -0.15
LIMS3-201ENST00000437679 APOPT1Q96IL0 206 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 CNPPD1Q9BV87 410 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 PARD6BQ9BYG5 372 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 C12orf65Q9H3J6 166 aaKnown RBP14.12□□□□□ -0.15
LIMS3-201ENST00000437679 LIN28AQ9H9Z2 209 aaKnown RBP14.12□□□□□ -0.15
LIMS3-201ENST00000437679 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.12□□□□□ -0.15
LIMS3-201ENST00000437679 OXSMQ9NWU1 459 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 MKS1Q9NXB0 559 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 LGALS13Q9UHV8 139 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 ERVK-11Q9UQG0 969 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 TIMM22Q9Y584 194 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 HECTD1Q9ULT8 2610 aa14.12□□□□□ -0.15
LIMS3-201ENST00000437679 SPTBN1Q01082 2364 aaKnown RBP14.12□□□□□ -0.15
LIMS3-201ENST00000437679 SPTAN1Q13813 2472 aaKnown RBP14.12□□□□□ -0.15
LIMS3-201ENST00000437679 A8MVJ9 347 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 WWP2O00308 870 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 PGRMC2O15173 223 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 NME2P1O60361 137 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 SLC35E2P0CK97 266 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 NME2P22392 152 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 GALNSP34059 522 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 TDGF1P3P51864 188 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 HK2P52789 917 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 ZNF267Q14586 743 aaPredicted RBP14.11□□□□□ -0.15
LIMS3-201ENST00000437679 SPRED3Q2MJR0 410 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 LIPMQ5VYY2 423 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 FAM219BQ5XKK7 198 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 C16orf47Q6ZP98 133 aaPredicted RBP14.11□□□□□ -0.15
LIMS3-201ENST00000437679 DGAT2L6Q6ZPD8 337 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 FRMD7Q6ZUT3 714 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 GPALPP1Q8IXQ4 340 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 SRRM1Q8IYB3 904 aaKnown RBP14.11□□□□□ -0.15
LIMS3-201ENST00000437679 MREGQ8N565 214 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 OR4K14Q8NGD5 310 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 UCN3Q969E3 161 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 FBXL20Q96IG2 436 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 KCNA7Q96RP8 456 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 FAIM2Q9BWQ8 316 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 HPF1Q9NWY4 346 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 KLF13Q9Y2Y9 288 aaPredicted RBP14.11□□□□□ -0.15
LIMS3-201ENST00000437679 PLLPQ9Y342 182 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 PCDHA9Q9Y5H5 950 aa14.11□□□□□ -0.15
LIMS3-201ENST00000437679 C1orf226A1L170 272 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 TMEM200CA6NKL6 621 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 UBFD1O14562 309 aaKnown RBP14.1□□□□□ -0.15
LIMS3-201ENST00000437679 SEMA7AO75326 666 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 IGKV3-11P04433 115 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 TUBBP07437 444 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 CHN1P15882 459 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 MST1P26927 711 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 DEKP35659 375 aaKnown RBP14.1□□□□□ -0.15
LIMS3-201ENST00000437679 HTR6P50406 440 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 XKP51811 444 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 TRA2BP62995 288 aaKnown RBP14.1□□□□□ -0.15
LIMS3-201ENST00000437679 ERVK-8P63133 956 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 ALDH6A1Q02252 535 aaKnown RBP14.1□□□□□ -0.15
LIMS3-201ENST00000437679 ACSM2AQ08AH3 577 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 ASPHQ12797 758 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 SPIN4Q56A73 249 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 C6orf163Q5TEZ5 329 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 ACSM2BQ68CK6 577 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 GFRALQ6UXV0 394 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.1□□□□□ -0.15
LIMS3-201ENST00000437679 ZNF227Q86WZ6 799 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 BANPQ8N9N5 519 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 NUBPLQ8TB37 319 aa14.1□□□□□ -0.15
LIMS3-201ENST00000437679 SSC4DQ8WTU2 575 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms