RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 EXOSC8Q96B26 276 aaKnown RBP17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 SMIM10Q96HG1 83 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 BBS4Q96RK4 519 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 SH3GL3Q99963 347 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 SLC35A5Q9BS91 424 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 NPLQ9BXD5 320 aaPredicted RBP17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 SLC35C2Q9NQQ7 365 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 SLC6A13Q9NSD5 602 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 SOHLH2Q9NX45 425 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 FBXW2Q9UKT8 454 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 SLC6A14Q9UN76 642 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 PLCL2Q9UPR0 1127 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 CACNA1EQ15878 2313 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 LOC105369274A0A096LPK9 316 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 LOC102723532A0A0G2JNH3 316 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 ALPLP05186 524 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 THRBP10828 461 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 SOAT1P35610 550 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 FRKP42685 505 aaPredicted RBP17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 MAGEA8P43361 318 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 CDK9P50750 372 aaKnown RBP17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 PPP1CAP62136 330 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 SPIDRQ14159 915 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 SHBQ15464 509 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 CPZQ66K79 652 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 FAM92BQ6ZTR7 304 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 OR4N4Q8N0Y3 316 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 OR4C6Q8NH72 309 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 MOAP1Q96BY2 351 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 TGM7Q96PF1 710 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 MAP3K3Q99759 626 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 RBM4BQ9BQ04 359 aaKnown RBP17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 RBM4Q9BWF3 364 aaKnown RBP17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 IKZF5Q9H5V7 419 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 ANKHQ9HCJ1 492 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 SEMA3GQ9NS98 782 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 SAMD4AQ9UPU9 718 aaKnown RBP17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 CEPT1Q9Y6K0 416 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 ZNF780BQ9Y6R6 833 aa17.21■□□□□ 0.35
CCDC88C-203ENST00000389856 IGHV1OR21-1A0A087WYE8 117 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 CCDC160A6NGH7 325 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 G3V2T6 193 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 P2RX6O15547 441 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 PROM1O43490 865 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 AIFM1O95831 613 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 CPN2P22792 545 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 PCBP4P57723 403 aaKnown RBP17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 TNFRSF17Q02223 184 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 SPDYE7PQ495Y7 208 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 DEFB134Q4QY38 66 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 GARNL3Q5VVW2 1013 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 SLC48A1Q6P1K1 146 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 BHLHB9Q6PI77 547 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 ANGPTL8Q6UXH0 198 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 KMT5CQ86Y97 462 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 DNAJC22Q8N4W6 341 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 OR52N2Q8NGI0 321 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 OR5K1Q8NHB7 308 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 SAP25Q8TEE9 199 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 DDX18Q9NVP1 670 aaKnown RBP17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 RSL24D1Q9UHA3 163 aaKnown RBP17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 ATG4BQ9Y4P1 393 aa17.2■□□□□ 0.34
CCDC88C-203ENST00000389856 GOLGA4Q13439 2230 aaKnown RBP17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 A0A1W2PR48 441 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 C4orf51C9J302 202 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 B3GALT4O96024 378 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 CST1P01037 141 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 CDH2P19022 906 aaPredicted RBP17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 CSNK2A2P19784 350 aaPredicted RBP17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 EFNA1P20827 205 aaPredicted RBP17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 ANXA11P50995 505 aaKnown RBP17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 RPS6KA3P51812 740 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 RBBP4Q09028 425 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 VEZF1Q14119 521 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 ZBED5Q49AG3 693 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 HIPK1Q86Z02 1210 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 SLC30A8Q8IWU4 369 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 CLEC4FQ8N1N0 589 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 AMER3Q8N944 861 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 ZBTB44Q8NCP5 570 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 FBXO30Q8TB52 745 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 ADAMTS18Q8TE60 1221 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 NAT6Q93015 286 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 PYURFQ96I23 114 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 CNDP2Q96KP4 475 aaKnown RBP17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 GAREM1Q9H706 876 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 IFT80Q9P2H3 777 aaPredicted RBP17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 RPS6KA6Q9UK32 745 aa17.19■□□□□ 0.34
CCDC88C-203ENST00000389856 PRKD3O94806 890 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 GNAO1P09471 354 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 SP9P0CG40 484 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 MPIP34949 423 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 GPC1P35052 558 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 MAGEA2P43356 314 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 OR1D5P58170 312 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 GAB1Q13480 694 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 RGNQ15493 299 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 MPEG1Q2M385 716 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 VMACQ2NL98 169 aa17.18■□□□□ 0.34
CCDC88C-203ENST00000389856 SLC23A3Q6PIS1 610 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms