RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 TCTN3Q6NUS6 607 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 PTCHD4Q6ZW05 846 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 SLC46A3Q7Z3Q1 461 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 CERS4Q9HA82 394 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 OBP2AQ9NY56 170 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 GDE1Q9NZC3 331 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 ADAM29Q9UKF5 820 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 TMCC3Q9ULS5 477 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 KCNK6Q9Y257 313 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 KPNA4O00629 521 aaPredicted RBP20.65■□□□□ 0.9
SHMT1-202ENST00000352886 STATHP02808 62 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 FGL2Q14314 439 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 KIAA1161Q6NSJ0 714 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 DEF8Q6ZN54 512 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 RBM45Q8IUH3 476 aaKnown RBP20.65■□□□□ 0.9
SHMT1-202ENST00000352886 FAM20CQ8IXL6 584 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 OR2A1Q8NGT9 310 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 DPH7Q9BTV6 452 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 RSPH9Q9H1X1 276 aaPredicted RBP20.65■□□□□ 0.9
SHMT1-202ENST00000352886 ACSS1Q9NUB1 689 aaPredicted RBP20.65■□□□□ 0.9
SHMT1-202ENST00000352886 TAS2R16Q9NYV7 291 aa20.65■□□□□ 0.9
SHMT1-202ENST00000352886 SNRNP200O75643 2136 aaKnown RBP20.64■□□□□ 0.9
SHMT1-202ENST00000352886 WASHC1A8K0Z3 465 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 BOLA2-SMG1P6H3BVE0 249 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 SLC28A2O43868 658 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 TRIM23P36406 574 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 GSTM5P46439 218 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 BCAP31P51572 246 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 IFITM3Q01628 133 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 SEC23BQ15437 767 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 NDUFAF5Q5TEU4 345 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 NIPAL1Q6NVV3 410 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 WASH2PQ6VEQ5 465 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 OR5D16Q8NGK9 328 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 MCFD2Q8NI22 146 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 CREB3L4Q8TEY5 395 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 ZNF764Q96H86 408 aaPredicted RBP20.64■□□□□ 0.89
SHMT1-202ENST00000352886 ZNF354BQ96LW1 612 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 CAMK1GQ96NX5 476 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 AICDAQ9GZX7 198 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 SEC14L3Q9UDX4 400 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 ZFR2Q9UPR6 939 aaKnown RBP20.64■□□□□ 0.89
SHMT1-202ENST00000352886 A0A0A6YYD5 115 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 TMEM247A6NEH6 219 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 PRR23AA6NEV1 266 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 GPR89AB7ZAQ6 455 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 CLEC3AO75596 197 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 GPR89BP0CG08 455 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 OR12D1P0DN82 309 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 ELAVL4P26378 380 aaKnown RBP20.64■□□□□ 0.89
SHMT1-202ENST00000352886 GPC1P35052 558 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 KCNJ5P48544 419 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 RAB28P51157 221 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 DMPKQ09013 629 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 SYPL1Q16563 259 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 ZNF793Q6ZN11 406 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 OR4D11Q8NGI4 311 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 PSMA8Q8TAA3 256 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 ZNF607Q96SK3 696 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 TREX2Q9BQ50 279 aaPredicted RBP20.64■□□□□ 0.89
SHMT1-202ENST00000352886 WFDC6Q9BQY6 131 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 DSN1Q9H410 356 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 TRPV4Q9HBA0 871 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 WBP1LQ9NX94 342 aa20.64■□□□□ 0.89
SHMT1-202ENST00000352886 DSPPQ9NZW4 1301 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 LRIT2A6NDA9 550 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 MPZL2O60487 215 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 PRKRAO75569 313 aaKnown RBP20.63■□□□□ 0.89
SHMT1-202ENST00000352886 ADAP00813 363 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 GRK5P34947 590 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 UGT2B10P36537 528 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 MAGEA10P43363 369 aaPredicted RBP20.63■□□□□ 0.89
SHMT1-202ENST00000352886 CRISP3P54108 245 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 TUBA1BP68363 451 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 IRF3Q14653 427 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 OXA1LQ15070 435 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 FBXO43Q4G163 708 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 ARMCX4Q5H9R4 360 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 DCST1Q5T197 706 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 FAM109BQ6ICB4 259 aaPredicted RBP20.63■□□□□ 0.89
SHMT1-202ENST00000352886 TUBA1AQ71U36 451 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 TP53I13Q8NBR0 393 aaPredicted RBP20.63■□□□□ 0.89
SHMT1-202ENST00000352886 MROQ9BYG7 248 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 OR51I1Q9H343 314 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 GLIPR2Q9H4G4 154 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 C11orf16Q9NQ32 467 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 PHPT1Q9NRX4 125 aaPredicted RBP20.63■□□□□ 0.89
SHMT1-202ENST00000352886 SEMA3GQ9NS98 782 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 ZBTB32Q9Y2Y4 487 aaPredicted RBP20.63■□□□□ 0.89
SHMT1-202ENST00000352886 PRAMEF27A3QJZ7 478 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 RPLP0P05388 317 aaKnown RBP20.63■□□□□ 0.89
SHMT1-202ENST00000352886 HSMCR30P0CW71 290 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 CD72P21854 359 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 AGERQ15109 404 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 SLC35G5Q96KT7 338 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 MACROD1Q9BQ69 325 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 TMEM106CQ9BVX2 250 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 PLA2G2FQ9BZM2 168 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 CLN6Q9NWW5 311 aa20.63■□□□□ 0.89
SHMT1-202ENST00000352886 TAS2R7Q9NYW3 318 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms