RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 INPP5EQ9NRR6 644 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 VNN3Q9NY84 501 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 GPR89AB7ZAQ6 455 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 C9J4A7 227 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 MANBAO00462 879 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 PRKCGP05129 697 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 GPR89BP0CG08 455 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 INHBEP58166 350 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 SLC35F1Q5T1Q4 408 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 ZDHHC24Q6UX98 284 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 C15orf52Q6ZUT6 534 aaKnown RBP13.72□□□□□ -0.21
COL7A1-201ENST00000328333 GPC2Q8N158 579 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 WFIKKN2Q8TEU8 576 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 C7orf43Q8WVR3 580 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 GLYATL1Q969I3 302 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 CBY1Q9Y3M2 126 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 A0A1W2PS29 197 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 AHSA1O95433 338 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 ELK4P28324 431 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 EVI2BP34910 448 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 KCNAB2Q13303 367 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 POM121L1PQ3SYA9 428 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 TMPRSS12Q86WS5 348 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 PLA2G15Q8NCC3 412 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 OR13C3Q8NGS6 347 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 NUS1Q96E22 293 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 PRODH2Q9UF12 536 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 MTNR1AP48039 350 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 C22orf42Q6IC83 251 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 TRMT10BQ6PF06 316 aaKnown RBP13.72□□□□□ -0.21
COL7A1-201ENST00000328333 SLC22A25Q6T423 547 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 PTERQ96BW5 349 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 CA5BQ9Y2D0 317 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 CDC7O00311 574 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 TP53P04637 393 aaPredicted RBP13.72□□□□□ -0.21
COL7A1-201ENST00000328333 RFC2P35250 354 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 MELKQ14680 651 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 SLC51AQ86UW1 340 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 LILRB2Q8N423 598 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 FAM46BQ96A09 425 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 NUDT19A8MXV4 375 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 PDHXO00330 501 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 DLX3O60479 287 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 FHP07954 510 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 PTPN6P29350 595 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 TNFSF9P41273 254 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 NLGN2Q8NFZ4 835 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 SLC38A3Q99624 504 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 C9JVG2 144 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 CLRN1P58418 232 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 DCUN1D3Q8IWE4 304 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 CMIPQ8IY22 773 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 SLC5A11Q8WWX8 675 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 SLC28A3Q9HAS3 691 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 TMEM39AQ9NV64 488 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 ZNF225Q9UK10 706 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 CACNG2Q9Y698 323 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 OR6C74A6NCV1 312 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 OR7A17O14581 309 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 GNRHRP30968 328 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 PSPHP78330 225 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 RELAQ04206 551 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 C2CD4AQ8NCU7 369 aaPredicted RBP13.72□□□□□ -0.21
COL7A1-201ENST00000328333 ARNTL2Q8WYA1 636 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 GPRC5BQ9NZH0 403 aa13.72□□□□□ -0.21
COL7A1-201ENST00000328333 PEX14O75381 377 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 MT-CYBP00156 380 aaPredicted RBP13.71□□□□□ -0.21
COL7A1-201ENST00000328333 RAC2P15153 192 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 DLX5P56178 289 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 ACTR1AP61163 376 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 UBE2NLQ5JXB2 153 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 GAREM2Q75VX8 874 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 CMASQ8NFW8 434 aaPredicted RBP13.71□□□□□ -0.21
COL7A1-201ENST00000328333 MYLIPQ8WY64 445 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 THAP4Q8WY91 577 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 KCTD12Q96CX2 325 aaKnown RBP13.71□□□□□ -0.21
COL7A1-201ENST00000328333 DNAJC5Q9H3Z4 198 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 ZDHHC2Q9UIJ5 367 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 ZNFX1Q9P2E3 1918 aaKnown RBP13.71□□□□□ -0.21
COL7A1-201ENST00000328333 UGT2B7P16662 529 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 PTPRAP18433 802 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 TCEAL1Q15170 157 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 LINC00299Q6ZSB3 139 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 KDM1BQ8NB78 822 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 PELOQ9BRX2 385 aaKnown RBP13.71□□□□□ -0.21
COL7A1-201ENST00000328333 RLIMQ9NVW2 624 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 UBE2J1Q9Y385 318 aaPredicted RBP13.71□□□□□ -0.21
COL7A1-201ENST00000328333 ZNF736B4DX44 427 aaPredicted RBP13.71□□□□□ -0.21
COL7A1-201ENST00000328333 SOCS5O75159 536 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 TFPTP0C1Z6 253 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 KCT2Q8NC54 265 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 HBEGFQ99075 208 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 A8MV72 311 aaPredicted RBP13.71□□□□□ -0.21
COL7A1-201ENST00000328333 ADAP00813 363 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 ZNF33BQ06732 778 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 AGAP6Q5VW22 663 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 METTL2BQ6P1Q9 378 aaKnown RBP13.71□□□□□ -0.21
COL7A1-201ENST00000328333 RDH10Q8IZV5 341 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 ZNF366Q8N895 744 aa13.71□□□□□ -0.21
COL7A1-201ENST00000328333 DNAAF1Q8NEP3 725 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms