RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 MEF2AQ02078 507 aaPredicted RBP14.69□□□□□ -0.06
SHH-201ENST00000297261 EFR3AQ14156 821 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 MRPL58Q14197 206 aaKnown RBP14.69□□□□□ -0.06
SHH-201ENST00000297261 ZNHIT3Q15649 155 aaPredicted RBP14.69□□□□□ -0.06
SHH-201ENST00000297261 TATDN3Q17R31 274 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 CD300LGQ6UXG3 332 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 YIPF7Q8N8F6 280 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 ZNF583Q96ND8 569 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 ATOH8Q96SQ7 321 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 EFCAB11Q9BUY7 163 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 TREX1Q9NSU2 369 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 SPO11Q9Y5K1 396 aa14.69□□□□□ -0.06
SHH-201ENST00000297261 MAP1BP46821 2468 aaKnown RBP14.69□□□□□ -0.06
SHH-201ENST00000297261 ANXA2P2A6NMY6 339 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 ICMTO60725 284 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 IGLV3-25P01717 112 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 PRNPP04156 253 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 ANXA2P07355 339 aaKnown RBP14.68□□□□□ -0.06
SHH-201ENST00000297261 CXCR4P61073 352 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 ADARB1P78563 741 aaKnown RBP14.68□□□□□ -0.06
SHH-201ENST00000297261 POU4F3Q15319 338 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 SWI5Q1ZZU3 235 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 COMMD7Q86VX2 200 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 PELI3Q8N2H9 469 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 FTMTQ8N4E7 242 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 FAM86B1Q8N7N1 296 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 CHST4Q8NCG5 386 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 ARRDC2Q8TBH0 407 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 EGLN2Q96KS0 407 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 SLC22A12Q96S37 553 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 P2RX2Q9UBL9 471 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 OR2AT4A6NND4 320 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 KLKB1P03952 638 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 CD70P32970 193 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 ZC3H10Q96K80 434 aaKnown RBP14.68□□□□□ -0.06
SHH-201ENST00000297261 TAS2R10Q9NYW0 307 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 PI15O43692 258 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 CD1EP15812 388 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 ZNF10P21506 573 aaPredicted RBP14.68□□□□□ -0.06
SHH-201ENST00000297261 RGRP47804 291 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 ARCN1P48444 511 aaKnown RBP14.68□□□□□ -0.06
SHH-201ENST00000297261 NRIP1P48552 1158 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 NCBP2P52298 156 aaKnown RBP eCLIP14.68□□□□□ -0.06
SHH-201ENST00000297261 RACK1P63244 317 aaKnown RBP14.68□□□□□ -0.06
SHH-201ENST00000297261 ADAM8P78325 824 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 CD300CQ08708 224 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 DSG2Q14126 1118 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 TMED4Q7Z7H5 227 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 PIANPQ8IYJ0 282 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 TSEN15Q8WW01 171 aaKnown RBP14.68□□□□□ -0.06
SHH-201ENST00000297261 NKD1Q969G9 470 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 TEX37Q96LM6 180 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 SNX18Q96RF0 628 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 CENPOQ9BU64 300 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 ARL6Q9H0F7 186 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 OR51I1Q9H343 314 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 MRPL15Q9P015 296 aaKnown RBP14.68□□□□□ -0.06
SHH-201ENST00000297261 SLCO3A1Q9UIG8 710 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 PROM1O43490 865 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 STATHP02808 62 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 ACADMP11310 421 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 ADH5P11766 374 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 BDKRB1P46663 353 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 SCRN3Q0VDG4 424 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 TOR1AIP1Q5JTV8 583 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 CNIH2Q6PI25 160 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 PAMR1Q6UXH9 720 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 FAM109AQ8N4B1 249 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 IQCF1Q8N6M8 205 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 APIPQ96GX9 242 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 CAMK1GQ96NX5 476 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 NDC1Q9BTX1 674 aa14.68□□□□□ -0.06
SHH-201ENST00000297261 A0A1B0GVC2 190 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 A6NIN4 97 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 MEN1O00255 615 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 ARNTLO00327 626 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 TRIM3O75382 744 aaPredicted RBP14.67□□□□□ -0.06
SHH-201ENST00000297261 LATS1O95835 1130 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 CDK1P06493 297 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 PSMD8P48556 350 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 PKMYT1Q99640 499 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 ELL3Q9HB65 397 aaPredicted RBP14.67□□□□□ -0.06
SHH-201ENST00000297261 NUDT15Q9NV35 164 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 CLDN24A6NM45 220 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 NARSO43776 548 aaKnown RBP14.67□□□□□ -0.06
SHH-201ENST00000297261 ZNF432O94892 652 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 PRAMEF12O95522 483 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 PIK3CBP42338 1070 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 PNLIPRP1P54315 467 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 NFATC2Q13469 925 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 LASP1Q14847 261 aaKnown RBP14.67□□□□□ -0.06
SHH-201ENST00000297261 SLC30A6Q6NXT4 461 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 SUSD1Q6UWL2 747 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 TPRG1Q6ZUI0 275 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 TMEM25Q86YD3 366 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 NAGSQ8N159 534 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 CPA6Q8N4T0 437 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 CELF5Q8N6W0 485 aaKnown RBP14.67□□□□□ -0.06
SHH-201ENST00000297261 SETD6Q8TBK2 473 aa14.67□□□□□ -0.06
SHH-201ENST00000297261 TRMT2BQ96GJ1 504 aaKnown RBP14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms