RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 H3F3CQ6NXT2 135 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 HPS6Q86YV9 775 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 DDIASQ8IXT1 998 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 BEST3Q8N1M1 668 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 TMEM132CQ8N3T6 1108 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 ZNF781Q8N8C0 355 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 Q8NA96 180 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 CATSPER1Q8NEC5 780 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 CDC26Q8NHZ8 85 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 SLC2A12Q8TD20 617 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 C16orf78Q8WTQ4 265 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 TM9SF4Q92544 642 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 DAZLQ92904 295 aaKnown RBP12.46□□□□□ -0.41
VPS28-201ENST00000292510 RBM18Q96H35 190 aaKnown RBP12.46□□□□□ -0.41
VPS28-201ENST00000292510 LMF1Q96S06 567 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 OR8D2Q9GZM6 311 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 EPN3Q9H201 632 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 CDCP1Q9H5V8 836 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 GIMAP2Q9UG22 337 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 CES1P1Q9UKY3 287 aa12.46□□□□□ -0.41
VPS28-201ENST00000292510 PPIEQ9UNP9 301 aaKnown RBP12.46□□□□□ -0.41
VPS28-201ENST00000292510 C1orf226A1L170 272 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 SYNDIG1LA6NDD5 238 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 SLC28A1O00337 649 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 RGS14O43566 566 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 OR10H2O60403 315 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 GUCY1B2O75343 617 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 SEC22BO75396 215 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 SKAP2O75563 359 aaPredicted RBP12.45□□□□□ -0.42
VPS28-201ENST00000292510 ERAL1O75616 437 aaKnown RBP12.45□□□□□ -0.42
VPS28-201ENST00000292510 SASH3O75995 380 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 DDAH2O95865 285 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 PIK3R1P27986 724 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 PTGER1P34995 402 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 SLC1A6P48664 564 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 CLCN2P51788 898 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 XKP51811 444 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 MLLT10P55197 1068 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 TRA2BP62995 288 aaKnown RBP12.45□□□□□ -0.42
VPS28-201ENST00000292510 PLIN5Q00G26 463 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 DUSP2Q05923 314 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 KIAA0040Q15053 153 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 NR6A1Q15406 480 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 SLC48A1Q6P1K1 146 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 GALNT18Q6P9A2 607 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 Q6ZS92 163 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 ZNF605Q86T29 641 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 ST13P4Q8IZP2 240 aaPredicted RBP12.45□□□□□ -0.42
VPS28-201ENST00000292510 SLC5A8Q8N695 610 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 MORN4Q8NDC4 146 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 OR4K14Q8NGD5 310 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 OR14A16Q8NHC5 309 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 PNPLA2Q96AD5 504 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 VMP1Q96GC9 406 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 ATP6V1G3Q96LB4 118 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 ZNF354BQ96LW1 612 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 SORT1Q99523 831 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 FAIM2Q9BWQ8 316 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 DEFB126Q9BYW3 111 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 TRIM4Q9C037 500 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 LIN28AQ9H9Z2 209 aaKnown RBP12.45□□□□□ -0.42
VPS28-201ENST00000292510 LRTM1Q9HBL6 345 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 SIRT5Q9NXA8 310 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 ANKRD10Q9NXR5 420 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 STMN3Q9NZ72 180 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 TEKT2Q9UIF3 430 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 B3GNT3Q9Y2A9 372 aa12.45□□□□□ -0.42
VPS28-201ENST00000292510 TMEM114B3SHH9 223 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 LSM1O15116 133 aaKnown RBP12.44□□□□□ -0.42
VPS28-201ENST00000292510 SORBS2O94875 1100 aaKnown RBP12.44□□□□□ -0.42
VPS28-201ENST00000292510 JUNP05412 331 aaKnown RBP12.44□□□□□ -0.42
VPS28-201ENST00000292510 SLC35E2P0CK97 266 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 COX7A2P14406 83 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 PRPH2P23942 346 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 FEN1P39748 380 aaKnown RBP12.44□□□□□ -0.42
VPS28-201ENST00000292510 CASRP41180 1078 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 SLC18A1P54219 525 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 RPL38P63173 70 aaKnown RBP12.44□□□□□ -0.42
VPS28-201ENST00000292510 BST1Q10588 318 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 STX3Q13277 289 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 MEP1AQ16819 746 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 GALNTL6Q49A17 601 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 PRR30Q53SZ7 412 aaPredicted RBP12.44□□□□□ -0.42
VPS28-201ENST00000292510 NOXRED1Q6NXP6 359 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 C16orf47Q6ZP98 133 aaPredicted RBP12.44□□□□□ -0.42
VPS28-201ENST00000292510 RNF165Q6ZSG1 346 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 RPS19BP1Q86WX3 136 aaKnown RBP12.44□□□□□ -0.42
VPS28-201ENST00000292510 OR1N1Q8NGS0 311 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 ZNF721Q8TF20 911 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 KLHL29Q96CT2 875 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 SENP5Q96HI0 755 aaPredicted RBP12.44□□□□□ -0.42
VPS28-201ENST00000292510 C3orf30Q96M34 536 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 SH3GL2Q99962 352 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 CNPPD1Q9BV87 410 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 ILKAPQ9H0C8 392 aaPredicted RBP12.44□□□□□ -0.42
VPS28-201ENST00000292510 VIPAS39Q9H9C1 493 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 SLAMF7Q9NQ25 335 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 C1orf109Q9NX04 203 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 NKIRAS1Q9NYS0 192 aa12.44□□□□□ -0.42
VPS28-201ENST00000292510 FASNP49327 2511 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms