RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 KIAA1958Q8N8K9 716 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 DTX3Q8N9I9 347 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 KREMEN2Q8NCW0 462 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 OR9A1PQ8NGU1 263 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 SLC38A5Q8WUX1 472 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 PRAP1Q96NZ9 151 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 AGAP4Q96P64 663 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 PHOX2BQ99453 314 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 FNDC11Q9BVV2 318 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 CPEB1Q9BZB8 566 aaKnown RBP12.03□□□□□ -0.48
LIG1-201ENST00000263274 EQTNQ9NQ60 294 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 ENOPH1Q9UHY7 261 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 MAPRE3Q9UPY8 281 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 FKTNO75072 461 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 ACRP10323 421 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 PTX3P26022 381 aaPredicted RBP12.03□□□□□ -0.48
LIG1-201ENST00000263274 XCR1P46094 333 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 LSM11P83369 360 aaKnown RBP eCLIP12.03□□□□□ -0.48
LIG1-201ENST00000263274 TLE2Q04725 743 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 FCHO2Q0JRZ9 810 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 HEPACAMQ14CZ8 416 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 EIF4HQ15056 248 aaKnown RBP12.03□□□□□ -0.48
LIG1-201ENST00000263274 BAK1Q16611 211 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 CRTC2Q53ET0 693 aaPredicted RBP12.03□□□□□ -0.48
LIG1-201ENST00000263274 ATAT1Q5SQI0 421 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 OR2G6Q5TZ20 316 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 ZNF544Q6NX49 715 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 C6orf120Q7Z4R8 191 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 WDR53Q7Z5U6 358 aaPredicted RBP12.03□□□□□ -0.48
LIG1-201ENST00000263274 FAM20CQ8IXL6 584 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 SLC39A11Q8N1S5 342 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 OR5AR1Q8NGP9 310 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 OR56A3Q8NH54 315 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 TMEM80Q96HE8 168 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 ART5Q96L15 291 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 SPATA9Q9BWV2 254 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 IL36AQ9UHA7 158 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 SLC13A4Q9UKG4 626 aa12.03□□□□□ -0.48
LIG1-201ENST00000263274 A0A1W2PQ09 198 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 PLD2O14939 933 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 UGT2B17O75795 530 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 PTPN2P17706 415 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 PSMB5P28074 263 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 CCR2P41597 374 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 RAB25P57735 213 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 TAP2Q03519 686 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 CDC20Q12834 499 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 PUM1Q14671 1186 aaKnown RBP eCLIP12.02□□□□□ -0.487e-8■□□□□ 9.8
LIG1-201ENST00000263274 SYPL1Q16563 259 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 CRB2Q5IJ48 1285 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 PRAMEF14Q5SWL7 426 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 PRAMEF13Q5VWM6 474 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 NXPE4Q6UWF7 544 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 LIPIQ6XZB0 460 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 UBE2Q1Q7Z7E8 422 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 OR4C15Q8NGM1 316 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 SIGLEC11Q96RL6 698 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 CHST8Q9H2A9 424 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 AHSPQ9NZD4 102 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 UGT2A1Q9Y4X1 527 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 KLK4Q9Y5K2 254 aa12.02□□□□□ -0.48
LIG1-201ENST00000263274 QSOX1O00391 747 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 FRS3O43559 492 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 CSO75390 466 aaKnown RBP12.02□□□□□ -0.49
LIG1-201ENST00000263274 CRYZL1O95825 349 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 ARAFP10398 606 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 MYL12AP19105 171 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 PRKACBP22694 351 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 DOC2BQ14184 412 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 GINS1Q14691 196 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 TMEM215Q68D42 235 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 PRR23CQ6ZRP0 262 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 IQCHQ86VS3 1027 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 CPXM2Q8N436 756 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 GATAD2BQ8WXI9 593 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 SLC9A6Q92581 669 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 ARMC5Q96C12 935 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 OPALINQ96PE5 141 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 FBXL12Q9NXK8 326 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 CCDC59Q9P031 241 aaKnown RBP12.02□□□□□ -0.49
LIG1-201ENST00000263274 IL20RAQ9UHF4 553 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 NUFIP1Q9UHK0 495 aaKnown RBP12.02□□□□□ -0.49
LIG1-201ENST00000263274 CCDC182A6NF36 153 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 PDPK1O15530 556 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 OR1F1O43749 312 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 CTSLP07711 333 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 C8orf89P0DMQ9 161 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 ZNF91Q05481 1191 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 MPP7Q5T2T1 576 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 HENMT1Q5T8I9 393 aaKnown RBP12.02□□□□□ -0.49
LIG1-201ENST00000263274 LHFPL3Q86UP9 236 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 C17orf64Q86WR6 236 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 ENKURQ8TC29 256 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 UCN3Q969E3 161 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 LRR1Q96L50 414 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 WFDC6Q9BQY6 131 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 RACGAP1Q9H0H5 632 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 TBC1D17Q9HA65 648 aa12.02□□□□□ -0.49
LIG1-201ENST00000263274 MOV10Q9HCE1 1003 aaKnown RBP12.02□□□□□ -0.49
LIG1-201ENST00000263274 PAQR5Q9NXK6 330 aaPredicted RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms