RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 PFDN4Q9NQP4 134 aa12.37□□□□□ -0.43
GTF3A-209ENST00000640289 PNO1Q9NRX1 252 aaKnown RBP12.37□□□□□ -0.43
GTF3A-209ENST00000640289 VTI1BQ9UEU0 232 aa12.37□□□□□ -0.43
GTF3A-209ENST00000640289 CES1P1Q9UKY3 287 aa12.37□□□□□ -0.43
GTF3A-209ENST00000640289 TMED5Q9Y3A6 229 aa12.37□□□□□ -0.43
GTF3A-209ENST00000640289 USH1CQ9Y6N9 552 aa12.37□□□□□ -0.43
GTF3A-209ENST00000640289 LAMA5O15230 3695 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 NSG1A0A0A6YYJ2 146 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 A0A1W2PQ72 361 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 TRPC5OSA6NMA1 111 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 SLCO1B7G3V0H7 640 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 PCDH17O14917 1159 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 EDF1O60869 148 aaKnown RBP12.36□□□□□ -0.43
GTF3A-209ENST00000640289 LRATO95237 230 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 GPR75O95800 540 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 HPP00738 406 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 IFNA16P05015 189 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 CELA2AP08217 269 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 BCKDHAP12694 445 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 MDH1P40925 334 aaKnown RBP12.36□□□□□ -0.43
GTF3A-209ENST00000640289 IGLV3-21P80748 117 aaPredicted RBP12.36□□□□□ -0.43
GTF3A-209ENST00000640289 ACTN3Q08043 901 aaPredicted RBP12.36□□□□□ -0.43
GTF3A-209ENST00000640289 C2orf80Q0P641 193 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 Q0VFX4 171 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 PRSS53Q2L4Q9 553 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 PAPD4Q6PIY7 484 aaKnown RBP12.36□□□□□ -0.43
GTF3A-209ENST00000640289 DGAT2L6Q6ZPD8 337 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 LARP4Q71RC2 724 aaKnown RBP eCLIP12.36□□□□□ -0.43
GTF3A-209ENST00000640289 NDUFAF7Q7L592 441 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 PARP9Q8IXQ6 854 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 LIX1Q8N485 282 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 TMEM102Q8N9M5 508 aaPredicted RBP12.36□□□□□ -0.43
GTF3A-209ENST00000640289 DOK4Q8TEW6 326 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 PPWD1Q96BP3 646 aaKnown RBP12.36□□□□□ -0.43
GTF3A-209ENST00000640289 THOC1Q96FV9 657 aaKnown RBP12.36□□□□□ -0.43
GTF3A-209ENST00000640289 FER1L6-AS2Q96M78 137 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 CATSPER2Q96P56 530 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 ING2Q9H160 280 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 MYNNQ9NPC7 610 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 EXO1Q9UQ84 846 aaKnown RBP12.36□□□□□ -0.43
GTF3A-209ENST00000640289 DMXL2Q8TDJ6 3036 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 NUP210LQ5VU65 1888 aa12.36□□□□□ -0.43
GTF3A-209ENST00000640289 ACACBO00763 2458 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 CCDC88CQ9P219 2028 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 AKAP10O43572 662 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 ERAL1O75616 437 aaKnown RBP12.35□□□□□ -0.43
GTF3A-209ENST00000640289 G6PDP11413 515 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 LBPP18428 481 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 DDCP20711 480 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 PIK3R1P27986 724 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 MAPK1P28482 360 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 GSTM5P46439 218 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 CCL11P51671 97 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 GYS2P54840 703 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 RRADP55042 308 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 DIO3P55073 304 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 ERVK-8P63133 956 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 EMX2Q04743 252 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 DUSP2Q05923 314 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 SERTAD2Q14140 314 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 PTGR1Q14914 329 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 HEPACAMQ14CZ8 416 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 LINC00303Q3SY05 128 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 BORAQ6PGQ7 559 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 OR4K14Q8NGD5 310 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 APOBEC4Q8WW27 367 aaKnown RBP12.35□□□□□ -0.43
GTF3A-209ENST00000640289 EXOSC8Q96B26 276 aaKnown RBP12.35□□□□□ -0.43
GTF3A-209ENST00000640289 KLHL29Q96CT2 875 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 VPS50Q96JG6 964 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 MAELQ96JY0 434 aaKnown RBP12.35□□□□□ -0.43
GTF3A-209ENST00000640289 IMMP1LQ96LU5 166 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 OR52B2Q96RD2 323 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 LPAR4Q99677 370 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 EBF4Q9BQW3 602 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 TUBB6Q9BUF5 446 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 UTS2RQ9UKP6 389 aa12.35□□□□□ -0.43
GTF3A-209ENST00000640289 SAGE2PA6NJ88 616 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 A6NL46 340 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 DIAPH2O60879 1101 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 VPS4BO75351 444 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 ALDOCP09972 364 aaKnown RBP12.34□□□□□ -0.43
GTF3A-209ENST00000640289 PRPS2P11908 318 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 DRD2P14416 443 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 ALOX15P16050 662 aaPredicted RBP12.34□□□□□ -0.43
GTF3A-209ENST00000640289 PTGER1P34995 402 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 FEN1P39748 380 aaKnown RBP12.34□□□□□ -0.43
GTF3A-209ENST00000640289 STT3AP46977 705 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 XKP51811 444 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 AQP5P55064 265 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 SLC26A5P58743 744 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 MAD2L1Q13257 205 aaPredicted RBP12.34□□□□□ -0.43
GTF3A-209ENST00000640289 RAPSNQ13702 412 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 SMU1Q2TAY7 513 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 BTBD16Q32M84 506 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 NXNQ6DKJ4 435 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 ANKRD26P1Q6NSI1 321 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 EPGNQ6UW88 154 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 IKBIPQ70UQ0 350 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 TICAM1Q8IUC6 712 aa12.34□□□□□ -0.43
GTF3A-209ENST00000640289 APLFQ8IW19 511 aaPredicted RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms