RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 CHD4Q14839 1912 aa2.67□□□□□ -1.98
CD44-239ENST00000639002 CDC42BPBQ9Y5S2 1711 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 ILVBLA1L0T0 632 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 TSPY2A6NKD2 308 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 HMGB1P1B2RPK0 211 aaPredicted RBP2.66□□□□□ -1.98
CD44-239ENST00000639002 DUSP11O75319 330 aaKnown RBP2.66□□□□□ -1.98
CD44-239ENST00000639002 CSDE1O75534 798 aaKnown RBP2.66□□□□□ -1.98
CD44-239ENST00000639002 GRAP2O75791 330 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 OR1D2P34982 312 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 NDST1P52848 882 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 UCNP55089 124 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 FOLH1Q04609 750 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 MFGE8Q08431 387 aaPredicted RBP2.66□□□□□ -1.98
CD44-239ENST00000639002 PPP1R3AQ16821 1122 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 CAPN13Q6MZZ7 669 aaPredicted RBP2.66□□□□□ -1.98
CD44-239ENST00000639002 ABRAXAS1Q6UWZ7 409 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 SPATA21Q7Z572 469 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 PHLDB2Q86SQ0 1253 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 OR4F5Q8NH21 305 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 FAM104AQ969W3 186 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 EXOC4Q96A65 974 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 FAF2Q96CS3 445 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 BSCL2Q96G97 398 aaPredicted RBP2.66□□□□□ -1.98
CD44-239ENST00000639002 OR10A4Q9H209 315 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 TNMDQ9H2S6 317 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 IL1RL2Q9HB29 575 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 ABCC13Q9NSE7 274 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 RPS6KB2Q9UBS0 482 aa2.66□□□□□ -1.98
CD44-239ENST00000639002 ZFP92A6NM28 416 aa2.65□□□□□ -1.99
CD44-239ENST00000639002 RNF212BA8MTL3 300 aa2.65□□□□□ -1.99
CD44-239ENST00000639002 ZFYP08048 801 aaPredicted RBP2.65□□□□□ -1.99
CD44-239ENST00000639002 FCGR3AP08637 254 aa2.65□□□□□ -1.99
CD44-239ENST00000639002 P4HA1P13674 534 aa2.65□□□□□ -1.99
CD44-239ENST00000639002 ZNF17P17021 662 aa2.65□□□□□ -1.99
CD44-239ENST00000639002 GLRA1P23415 457 aa2.65□□□□□ -1.99
CD44-239ENST00000639002 ZNF41P51814 821 aaPredicted RBP2.65□□□□□ -1.99
CD44-239ENST00000639002 STX17P56962 302 aa2.65□□□□□ -1.99
CD44-239ENST00000639002 CHDHQ8NE62 594 aaPredicted RBP2.65□□□□□ -1.99
CD44-239ENST00000639002 INTS14Q96SY0 518 aa2.65□□□□□ -1.99
CD44-239ENST00000639002 UBA5Q9GZZ9 404 aa2.65□□□□□ -1.99
CD44-239ENST00000639002 ATP6AP2A0A1C7CYW4 349 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 HTR3EA5X5Y0 456 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 M0R296 226 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 IGKV3-11P04433 115 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 VIMP08670 466 aaKnown RBP2.64□□□□□ -1.99
CD44-239ENST00000639002 SLC35E2P0CK97 266 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 PRKCIP41743 596 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 MAGEA9P43362 315 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 MTIF2P46199 727 aaKnown RBP2.64□□□□□ -1.99
CD44-239ENST00000639002 HNRNPA3P51991 378 aaKnown RBP2.64□□□□□ -1.99
CD44-239ENST00000639002 ZNF133P52736 654 aaPredicted RBP2.64□□□□□ -1.99
CD44-239ENST00000639002 PSMD6Q15008 389 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 IQCCQ4KMZ1 466 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 PAN3Q58A45 887 aaKnown RBP2.64□□□□□ -1.99
CD44-239ENST00000639002 C1orf141Q5JVX7 400 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 FAM219BQ5XKK7 198 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 SPATA19Q7Z5L4 167 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 WDR49Q8IV35 697 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 GVQW1Q8N7I0 195 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 VN1R17PQ8TDU5 208 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 RNF138Q8WVD3 245 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 PCED1BQ96HM7 432 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 PIWIL1Q96J94 861 aaKnown RBP2.64□□□□□ -1.99
CD44-239ENST00000639002 RAB40CQ96S21 281 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 ATG101Q9BSB4 218 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 CXXC4Q9H2H0 198 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 DPEP3Q9H4B8 488 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 MYOZ2Q9NPC6 264 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 TMEM9Q9P0T7 183 aa2.64□□□□□ -1.99
CD44-239ENST00000639002 IGHV3OR16-12A0A075B7B8 117 aa2.63□□□□□ -1.99
CD44-239ENST00000639002 FRG2CA6NGY1 282 aa2.63□□□□□ -1.99
CD44-239ENST00000639002 CCSO14618 274 aa2.63□□□□□ -1.99
CD44-239ENST00000639002 RPN1P04843 607 aaKnown RBP2.63□□□□□ -1.99
CD44-239ENST00000639002 PPP2R1BP30154 601 aa2.63□□□□□ -1.99
CD44-239ENST00000639002 NPBWR1P48145 328 aa2.63□□□□□ -1.99
CD44-239ENST00000639002 CCR4P51679 360 aa2.63□□□□□ -1.99
CD44-239ENST00000639002 TOMM20Q15388 145 aa2.63□□□□□ -1.99
CD44-239ENST00000639002 ALKBH5Q6P6C2 394 aaKnown RBP2.63□□□□□ -1.99
CD44-239ENST00000639002 SIGLEC15Q6ZMC9 328 aa2.63□□□□□ -1.99
CD44-239ENST00000639002 FBXW8Q8N3Y1 598 aa2.63□□□□□ -1.99
CD44-239ENST00000639002 CCDC191Q8NCU4 936 aa2.63□□□□□ -1.99
CD44-239ENST00000639002 TCP11Q8WWU5 503 aa2.63□□□□□ -1.99
CD44-239ENST00000639002 MRPL24Q96A35 216 aaKnown RBP2.63□□□□□ -1.99
CD44-239ENST00000639002 C16orf58Q96GQ5 468 aa2.63□□□□□ -1.99
CD44-239ENST00000639002 RASL10BQ96S79 203 aa2.63□□□□□ -1.99
CD44-239ENST00000639002 ST6GALNAC5Q9BVH7 336 aa2.63□□□□□ -1.99
CD44-239ENST00000639002 WWP1Q9H0M0 922 aa2.63□□□□□ -1.99
CD44-239ENST00000639002 ISG20L2Q9H9L3 353 aaKnown RBP2.63□□□□□ -1.99
CD44-239ENST00000639002 GPR173Q9NS66 373 aa2.63□□□□□ -1.99
CD44-239ENST00000639002 OR1A2Q9Y585 309 aa2.63□□□□□ -1.99
CD44-239ENST00000639002 GPAA1O43292 621 aa2.62□□□□□ -1.99
CD44-239ENST00000639002 DUSP14O95147 198 aaKnown RBP2.62□□□□□ -1.99
CD44-239ENST00000639002 LAMP1P11279 417 aa2.62□□□□□ -1.99
CD44-239ENST00000639002 HSD17B1P14061 328 aa2.62□□□□□ -1.99
CD44-239ENST00000639002 CPN1P15169 458 aa2.62□□□□□ -1.99
CD44-239ENST00000639002 MDKP21741 143 aaPredicted RBP2.62□□□□□ -1.99
CD44-239ENST00000639002 CAPZA1P52907 286 aa2.62□□□□□ -1.99
CD44-239ENST00000639002 GSTO1P78417 241 aa2.62□□□□□ -1.99
CD44-239ENST00000639002 KCTD2Q14681 263 aa2.62□□□□□ -1.99
CD44-239ENST00000639002 EMC2Q15006 297 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms