RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 UGT2B10P36537 528 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 SRP14P37108 136 aaKnown RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 KIR2DS5Q14953 304 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 GRIN2CQ14957 1233 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 CDKN3Q16667 212 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 LIPJQ5W064 366 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 LSMEM2Q8N112 164 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 PEX11GQ96HA9 241 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 HS6ST2Q96MM7 605 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 ATF6BQ99941 703 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 PREBQ9HCU5 417 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 TMEM248Q9NWD8 314 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 GIN1Q9NXP7 522 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 LIPT1Q9Y234 373 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 PSAT1Q9Y617 370 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 hCG_2039718K7EN88 272 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 VILLO15195 856 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 PRICKLE3O43900 615 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 GLCEO94923 617 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 IFNA1P01562 189 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 C2P06681 752 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 CDK4P11802 303 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 CBLP22681 906 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 UQCRC2P22695 453 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 S100PP25815 95 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 SLC1A3P43003 542 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 LEPRP48357 1165 aaKnown RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 RPL11P62913 178 aaKnown RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF763Q0D2J5 394 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 POU4F2Q12837 409 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 LASP1Q14847 261 aaKnown RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF542PQ5EBM4 170 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 OGFRL1Q5TC84 451 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 KIAA0930Q6ICG6 404 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 RBM44Q6ZP01 1051 aaKnown RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 SPATC1Q76KD6 591 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 GALNT12Q8IXK2 581 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 GALNT15Q8N3T1 639 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 OBP2BQ9NPH6 170 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 PCDHGA10Q9Y5H3 936 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 ENTPD2Q9Y5L3 495 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 H3BML4 177 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 J3QLW9 94 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 COCHO43405 550 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 ORC5O43913 435 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 UGT1A9O60656 530 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 CNOT4O95628 575 aaKnown RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 CTSAP10619 480 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF19P17023 458 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 CD9P21926 228 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 RAD52P43351 418 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 OGDHQ02218 1023 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 AIMP2Q13155 320 aaKnown RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 CBLBQ13191 982 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 MLF2Q15773 248 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 DEFB133Q30KQ1 61 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 HSF5Q4G112 596 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 EXOSC6Q5RKV6 272 aaKnown RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 PRAMEF8Q5VWM4 474 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 PRAMEF7Q5VXH5 474 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 TLDC1Q6P9B6 456 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 MAMDC2Q7Z304 686 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 SNRNP27Q8WVK2 155 aaKnown RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 COG8Q96MW5 612 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 TSGA13Q96PP4 275 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 RBM24Q9BX46 236 aaKnown RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 UGT1A7Q9HAW7 530 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 UGT1A10Q9HAW8 530 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 UGT1A8Q9HAW9 530 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 PXDNQ92626 1479 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 KNDC1Q76NI1 1749 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 SLC1A7O00341 560 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 ACPPP15309 386 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 KCNE1P15382 129 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 PRKCAP17252 672 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 F8A1P23610 371 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 FMO3P31513 532 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 LIMK2P53671 638 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 ID2Q02363 134 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 CHRNEQ04844 493 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 SH3PXD2AQ5TCZ1 1133 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 REP15Q6BDI9 236 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 SLC18B1Q6NT16 456 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 DCDC5Q6ZRR9 648 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 GK5Q6ZS86 529 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 SLC22A16Q86VW1 577 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 FOXRED2Q8IWF2 684 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 CMTM1Q8IZ96 169 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 METTL25Q8N6Q8 603 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 GALNT11Q8NCW6 608 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 LRRN4Q8WUT4 740 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 FCRL5Q96RD9 977 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 PLLPQ9Y342 182 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 MON2Q7Z3U7 1717 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 SOCS7O14512 581 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 TIMM8AO60220 97 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 MYCLP1P12525 358 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 ANXA8P13928 327 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 TIMP2P16035 220 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 ERVK-8P63133 956 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms