RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 TXNDC9O14530 226 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 ARPC2O15144 300 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 LDB3O75112 727 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 LDOC1O95751 146 aaPredicted RBP18.95■□□□□ 0.62
CLN3-250ENST00000636839 ZCCHC18P0CG32 403 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 BUD31P41223 144 aaPredicted RBP18.95■□□□□ 0.62
CLN3-250ENST00000636839 MVDP53602 400 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 MRPS22P82650 360 aaKnown RBP18.95■□□□□ 0.62
CLN3-250ENST00000636839 ANGPTL8Q6UXH0 198 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 GPR155Q7Z3F1 870 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 SPATA24Q86W54 205 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 DHFR2Q86XF0 187 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 CALHM3Q86XJ0 350 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 OR2T12Q8NG77 320 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 FAM110BQ8TC76 370 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.95■□□□□ 0.62
CLN3-250ENST00000636839 OR5P2Q8WZ92 322 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 BBS4Q96RK4 519 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 FGF21Q9NSA1 209 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 PHF11Q9UIL8 331 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 CLCA2Q9UQC9 943 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 GDF9O60383 454 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 CKMT2P17540 419 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 RCN1Q15293 331 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 TCTE1Q5JU00 501 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 TTLL10Q6ZVT0 673 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 TTC29Q8NA56 475 aaPredicted RBP18.95■□□□□ 0.62
CLN3-250ENST00000636839 ADCY4Q8NFM4 1077 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 ZNF501Q96CX3 271 aaPredicted RBP18.95■□□□□ 0.62
CLN3-250ENST00000636839 FAM120BQ96EK7 910 aaKnown RBP18.95■□□□□ 0.62
CLN3-250ENST00000636839 MMABQ96EY8 250 aaPredicted RBP18.95■□□□□ 0.62
CLN3-250ENST00000636839 ZNF764Q96H86 408 aaPredicted RBP18.95■□□□□ 0.62
CLN3-250ENST00000636839 MAGED4Q96JG8 741 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 SH3GL1Q99961 368 aa18.95■□□□□ 0.62
CLN3-250ENST00000636839 MYO1GB0I1T2 1018 aa18.94■□□□□ 0.62
CLN3-250ENST00000636839 NME6O75414 186 aaPredicted RBP18.94■□□□□ 0.62
CLN3-250ENST00000636839 CDC123O75794 336 aaPredicted RBP18.94■□□□□ 0.62
CLN3-250ENST00000636839 GPX2P18283 190 aa18.94■□□□□ 0.62
CLN3-250ENST00000636839 ALAS2P22557 587 aa18.94■□□□□ 0.62
CLN3-250ENST00000636839 NUBP1P53384 320 aa18.94■□□□□ 0.62
CLN3-250ENST00000636839 RPS26P62854 115 aaKnown RBP18.94■□□□□ 0.62
CLN3-250ENST00000636839 TRAP1Q12931 704 aaKnown RBP18.94■□□□□ 0.62
CLN3-250ENST00000636839 GRM7Q14831 915 aa18.94■□□□□ 0.62
CLN3-250ENST00000636839 LTB4RQ15722 352 aa18.94■□□□□ 0.62
CLN3-250ENST00000636839 ZBED6CLQ96FA7 236 aaPredicted RBP18.94■□□□□ 0.62
CLN3-250ENST00000636839 PEX11GQ96HA9 241 aa18.94■□□□□ 0.62
CLN3-250ENST00000636839 GFM1Q96RP9 751 aaKnown RBP18.94■□□□□ 0.62
CLN3-250ENST00000636839 CUTCQ9NTM9 273 aa18.94■□□□□ 0.62
CLN3-250ENST00000636839 ZNF282Q9UDV7 671 aaPredicted RBP18.94■□□□□ 0.62
CLN3-250ENST00000636839 MAP4K5Q9Y4K4 846 aa18.94■□□□□ 0.62
CLN3-250ENST00000636839 EVPLLA8MZ36 301 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 ZNF749O43361 778 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 FGF17O60258 216 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 HTR1EP28566 365 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 OR1D4P47884 311 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 DUSP3P51452 185 aaPredicted RBP18.93■□□□□ 0.62
CLN3-250ENST00000636839 FAM53BQ14153 422 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 ADRM1Q16186 407 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 NDUFA9Q16795 377 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 CCDC157Q569K6 752 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 PHF19Q5T6S3 580 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 RNF111Q6ZNA4 994 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 RNF130Q86XS8 419 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 PTRH1Q86Y79 214 aaKnown RBP18.93■□□□□ 0.62
CLN3-250ENST00000636839 KMT5CQ86Y97 462 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 STMN2Q93045 179 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 MAL2Q969L2 176 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 PARD6AQ9NPB6 346 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 ACSS1Q9NUB1 689 aaPredicted RBP18.93■□□□□ 0.62
CLN3-250ENST00000636839 RAPGEFL1Q9UHV5 662 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 PCDHB3Q9Y5E6 796 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 PCDHGB2Q9Y5G2 931 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 NTN3O00634 580 aaPredicted RBP18.93■□□□□ 0.62
CLN3-250ENST00000636839 JRKO75564 520 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 KCNK5O95279 499 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 ETFAP13804 333 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 CHI3L1P36222 383 aaPredicted RBP18.93■□□□□ 0.62
CLN3-250ENST00000636839 XKP51811 444 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 FOLH1Q04609 750 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 LRRC74AQ0VAA2 488 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 SPIDRQ14159 915 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 RGNQ15493 299 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 TMTC4Q5T4D3 741 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 OR9A2Q8NGT5 310 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 COL26A1Q96A83 441 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 EDEM2Q9BV94 578 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 EPS8L2Q9H6S3 715 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 RNPEPL1Q9HAU8 725 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 SEMA4GQ9NTN9 838 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 MS4A12Q9NXJ0 267 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 NDOR1Q9UHB4 597 aa18.93■□□□□ 0.62
CLN3-250ENST00000636839 ADAMTS20P59510 1910 aa18.92■□□□□ 0.62
CLN3-250ENST00000636839 RNF103-CHMP3A0A140T963 221 aa18.92■□□□□ 0.62
CLN3-250ENST00000636839 TOX3O15405 576 aaPredicted RBP18.92■□□□□ 0.62
CLN3-250ENST00000636839 FLRT2O43155 660 aa18.92■□□□□ 0.62
CLN3-250ENST00000636839 TIAF1O95411 115 aa18.92■□□□□ 0.62
CLN3-250ENST00000636839 NSA2O95478 260 aaKnown RBP18.92■□□□□ 0.62
CLN3-250ENST00000636839 NTSP30990 170 aa18.92■□□□□ 0.62
CLN3-250ENST00000636839 TLX1P31314 330 aaPredicted RBP18.92■□□□□ 0.62
CLN3-250ENST00000636839 BNIP2Q12982 314 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms