RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 ATG4AQ8WYN0 398 aa13.25□□□□□ -0.29
CLN3-249ENST00000636685 NEIL2Q969S2 332 aa13.25□□□□□ -0.29
CLN3-249ENST00000636685 FAR2Q96K12 515 aa13.25□□□□□ -0.29
CLN3-249ENST00000636685 TSNARE1Q96NA8 513 aa13.25□□□□□ -0.29
CLN3-249ENST00000636685 ZFP3Q96NJ6 502 aa13.25□□□□□ -0.29
CLN3-249ENST00000636685 NPLQ9BXD5 320 aaPredicted RBP13.25□□□□□ -0.29
CLN3-249ENST00000636685 IL22Q9GZX6 179 aa13.25□□□□□ -0.29
CLN3-249ENST00000636685 UBQLN3Q9H347 655 aa13.25□□□□□ -0.29
CLN3-249ENST00000636685 CDC42EP3Q9UKI2 254 aa13.25□□□□□ -0.29
CLN3-249ENST00000636685 MRPS33Q9Y291 106 aaKnown RBP13.25□□□□□ -0.29
CLN3-249ENST00000636685 CYR61O00622 381 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 SPRY1O43609 319 aaPredicted RBP13.24□□□□□ -0.29
CLN3-249ENST00000636685 SIX3O95343 332 aaPredicted RBP13.24□□□□□ -0.29
CLN3-249ENST00000636685 SERPINA6P08185 405 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 MGAT1P26572 445 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 CCKARP32238 428 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 CD79BP40259 229 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 NAGLUP54802 743 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 TPM4P67936 248 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 KLF1Q13351 362 aaPredicted RBP13.24□□□□□ -0.29
CLN3-249ENST00000636685 CSHL1Q14406 222 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 TOMM20Q15388 145 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 BICRALQ6AI39 1079 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 C22orf34Q6ZV56 151 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 KIAA1328Q86T90 577 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 NUBPLQ8TB37 319 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 KCNJ9Q92806 393 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 GNRHR2Q96P88 292 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 FAM111AQ96PZ2 611 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 TM9SF2Q99805 663 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 KIFC1Q9BW19 673 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 PLA2G12AQ9BZM1 189 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 PARVBQ9HBI1 364 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 FBXO6Q9NRD1 293 aaPredicted RBP13.24□□□□□ -0.29
CLN3-249ENST00000636685 INTS10Q9NVR2 710 aaKnown RBP13.24□□□□□ -0.29
CLN3-249ENST00000636685 SYBUQ9NX95 663 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 BFARQ9NZS9 450 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 COPS7AQ9UBW8 275 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 DYSFO75923 2080 aa13.24□□□□□ -0.29
CLN3-249ENST00000636685 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 CTAGE9A4FU28 777 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 B3GALT2O43825 422 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 LDB3O75112 727 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 TNFSF13O75888 250 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 SMNDC1O75940 238 aaKnown RBP eCLIP13.23□□□□□ -0.29
CLN3-249ENST00000636685 PLAUP00749 431 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 FBXO45P0C2W1 286 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 HNRNPH1P31943 449 aaKnown RBP13.23□□□□□ -0.29
CLN3-249ENST00000636685 NPY2RP49146 381 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 ID2Q02363 134 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 DHX9Q08211 1270 aaKnown RBP13.23□□□□□ -0.29
CLN3-249ENST00000636685 FNDC7Q5VTL7 733 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 NEPROQ6NW34 567 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 BTLAQ7Z6A9 289 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 SLC15A4Q8N697 577 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 OR56A3Q8NH54 315 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 EEF1AKMT1Q8WVE0 214 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 DIO2Q92813 273 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 GAL3ST3Q96A11 431 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 QRFPRQ96P65 431 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 CCDC68Q9H2F9 335 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 LRTM1Q9HBL6 345 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 EIF2B3Q9NR50 452 aaKnown RBP13.23□□□□□ -0.29
CLN3-249ENST00000636685 PSD3Q9NYI0 1048 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 C15orf41Q9Y2V0 281 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 TGP01266 2768 aa13.23□□□□□ -0.29
CLN3-249ENST00000636685 EXPH5Q8NEV8 1989 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 A0A1W2PNV4 684 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 SYNDIG1LA6NDD5 238 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 MSTNO14793 375 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 ERI3O43414 337 aaKnown RBP13.22□□□□□ -0.29
CLN3-249ENST00000636685 GPRIN2O60269 458 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 C8GP07360 202 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 SERPINB3P29508 390 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 STIP1P31948 543 aaKnown RBP13.22□□□□□ -0.29
CLN3-249ENST00000636685 IDUAP35475 653 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 UGT2B10P36537 528 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 ACVR1BP36896 505 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 RPL21P46778 160 aaKnown RBP13.22□□□□□ -0.29
CLN3-249ENST00000636685 LIM2P55344 173 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 STXBP1P61764 594 aaKnown RBP13.22□□□□□ -0.29
CLN3-249ENST00000636685 OCRLQ01968 901 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 SRYQ05066 204 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 GAB1Q13480 694 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 C6orf52Q5T4I8 152 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 DUPD1Q68J44 220 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 ZNF470Q6ECI4 717 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 ZNF474Q6S9Z5 364 aaPredicted RBP13.22□□□□□ -0.29
CLN3-249ENST00000636685 ZNF704Q6ZNC4 412 aaPredicted RBP13.22□□□□□ -0.29
CLN3-249ENST00000636685 ADGRE4PQ86SQ3 457 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 YRDCQ86U90 279 aaKnown RBP13.22□□□□□ -0.29
CLN3-249ENST00000636685 DENND6AQ8IWF6 608 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 ROBO4Q8WZ75 1007 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 WNT2BQ93097 391 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 MS4A6EQ96DS6 147 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 AIF1LQ9BQI0 150 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 BEX2Q9BXY8 128 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 ANGPTL4Q9BY76 406 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 PCDHA13Q9Y5I0 950 aa13.22□□□□□ -0.29
CLN3-249ENST00000636685 IKBKGQ9Y6K9 419 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms