RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ULBP1Q9BZM6 244 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 MMADHCQ9H3L0 296 aaPredicted RBP4.08□□□□□ -1.76
LINC00540-201ENST00000611481 PARVGQ9HBI0 331 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 P4HTMQ9NXG6 502 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 HS3ST2Q9Y278 367 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 DRG1Q9Y295 367 aaKnown RBP4.08□□□□□ -1.76
LINC00540-201ENST00000611481 KLHL20Q9Y2M5 609 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 ZNF835Q9Y2P0 537 aa4.08□□□□□ -1.76
LINC00540-201ENST00000611481 ANKRD36A6QL64 1941 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 TRRAPQ9Y4A5 3859 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 SYNJ2BP-COX16A0A087WUM0 186 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 MBD3L5A6NJ08 208 aaPredicted RBP4.07□□□□□ -1.76
LINC00540-201ENST00000611481 O00370 1275 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 CD3EAPO15446 510 aaKnown RBP4.07□□□□□ -1.76
LINC00540-201ENST00000611481 KIF1CO43896 1103 aaKnown RBP4.07□□□□□ -1.76
LINC00540-201ENST00000611481 ALOX12BO75342 701 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 SCRG1O75711 98 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 PNPP00491 289 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 IGHEP01854 428 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 DLATP10515 647 aaKnown RBP4.07□□□□□ -1.76
LINC00540-201ENST00000611481 ABOP16442 354 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 PTAFRP25105 342 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 CHRNB4P30926 498 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 FASLGP48023 281 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 PCP4P48539 62 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 DIO1P49895 249 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 TKTL1P51854 596 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 DLX5P56178 289 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 OLR1P78380 273 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 ARG2P78540 354 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 CBX3Q13185 183 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 THOC5Q13769 683 aaKnown RBP4.07□□□□□ -1.76
LINC00540-201ENST00000611481 NAA25Q14CX7 972 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 INAQ16352 499 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 ZNF667Q5HYK9 610 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.07□□□□□ -1.76
LINC00540-201ENST00000611481 IRAK1BP1Q5VVH5 260 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 BSPRYQ5W0U4 402 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 CAVIN1Q6NZI2 390 aaKnown RBP4.07□□□□□ -1.76
LINC00540-201ENST00000611481 WDR73Q6P4I2 378 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 CYB5D1Q6P9G0 228 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 TRAT1Q6PIZ9 186 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 ARSKQ6UWY0 536 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 PRSS57Q6UWY2 283 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 DOLPP1Q86YN1 238 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 TMEM126BQ8IUX1 230 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 LINC00346Q8IVM7 164 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 SPARTQ8N0X7 666 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 LRRC75A-AS1Q8N1F1 130 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 RYBPQ8N488 228 aaPredicted RBP4.07□□□□□ -1.76
LINC00540-201ENST00000611481 MAPK1IP1LQ8NDC0 245 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 OR6K2Q8NGY2 324 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 B4GALNT2Q8NHY0 566 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 KIF18AQ8NI77 898 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 SUN3Q8TAQ9 357 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 ZFAND2BQ8WV99 257 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 TMEM171Q8WVE6 324 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 SMARCE1Q969G3 411 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 FAM149B1Q96BN6 582 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 INTS12Q96CB8 462 aaKnown RBP4.07□□□□□ -1.76
LINC00540-201ENST00000611481 AK8Q96MA6 479 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 C16orf45Q96MC5 204 aaPredicted RBP4.07□□□□□ -1.76
LINC00540-201ENST00000611481 HS6ST2Q96MM7 605 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 DACH2Q96NX9 599 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 IP6K3Q96PC2 410 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 TMEM237Q96Q45 408 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 HIST1H2AAQ96QV6 131 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 WDR24Q96S15 920 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 MAP3K3Q99759 626 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 CBWD1Q9BRT8 395 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 TMEM204Q9BSN7 226 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 TBC1D10AQ9BXI6 508 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 MRPL1Q9BYD6 325 aaKnown RBP4.07□□□□□ -1.76
LINC00540-201ENST00000611481 PLEKHF2Q9H8W4 249 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 MID1IP1Q9NPA3 183 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 GAR1Q9NY12 217 aaKnown RBP4.07□□□□□ -1.76
LINC00540-201ENST00000611481 DNAJB9Q9UBS3 223 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 RNF6Q9Y252 685 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 DOCK10Q96BY6 2186 aa4.07□□□□□ -1.76
LINC00540-201ENST00000611481 LOC105369274A0A096LPK9 316 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 TRAV17A0A0B4J275 112 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 LOC102723532A0A0G2JNH3 316 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 URADA6NGE7 173 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 YJEFN3A6XGL0 299 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 E7ENQ6 273 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 F5H5T6 163 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 CTDSP2O14595 271 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 TXNL1O43396 289 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 TLX2O43763 284 aaPredicted RBP4.06□□□□□ -1.76
LINC00540-201ENST00000611481 PRPSAP2O60256 369 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 SHOX2O60902 331 aaPredicted RBP4.06□□□□□ -1.76
LINC00540-201ENST00000611481 DNAJB6O75190 326 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 HEXIM1O94992 359 aaKnown RBP4.06□□□□□ -1.76
LINC00540-201ENST00000611481 C9P02748 559 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 UGT2B4P06133 528 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 CAPN1P07384 714 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 FDPSP14324 419 aaKnown RBP4.06□□□□□ -1.76
LINC00540-201ENST00000611481 PVRP15151 417 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 FOLR1P15328 257 aa4.06□□□□□ -1.76
LINC00540-201ENST00000611481 CREB1P16220 341 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms