RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 ACAP2Q15057 778 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 PFKFB4Q16877 469 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 MPEG1Q2M385 716 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 ZNF791Q3KP31 576 aaPredicted RBP7.05□□□□□ -1.28
CUX1-219ENST00000606749 GXYLT1Q4G148 440 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 NDUFAF5Q5TEU4 345 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 MROH9Q5TGP6 573 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 LIPJQ5W064 366 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 C18orf63Q68DL7 685 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 OPN5Q6U736 354 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 SYT10Q6XYQ8 523 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 DGAT2L6Q6ZPD8 337 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 CCDC91Q7Z6B0 441 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 GPR180Q86V85 440 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 SLC22A16Q86VW1 577 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 CENPLQ8N0S6 344 aaPredicted RBP7.05□□□□□ -1.28
CUX1-219ENST00000606749 ZCCHC7Q8N3Z6 543 aaKnown RBP7.05□□□□□ -1.28
CUX1-219ENST00000606749 RNF175Q8N4F7 328 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 RPRMLQ8N4K4 120 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 GOLM1Q8NBJ4 401 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 RHEBL1Q8TAI7 183 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 NUBPLQ8TB37 319 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 KCTD4Q8WVF5 259 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 RND1Q92730 232 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 TANKQ92844 425 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 RGMAQ96B86 450 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 PPWD1Q96BP3 646 aaKnown RBP7.05□□□□□ -1.28
CUX1-219ENST00000606749 C14orf79Q96F83 325 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 DGAT2Q96PD7 388 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 MTERF1Q99551 399 aaKnown RBP7.05□□□□□ -1.28
CUX1-219ENST00000606749 TREX2Q9BQ50 279 aaPredicted RBP7.05□□□□□ -1.28
CUX1-219ENST00000606749 TTTY12Q9BZ98 90 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 UCK2Q9BZX2 261 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 TP63Q9H3D4 680 aaPredicted RBP7.05□□□□□ -1.28
CUX1-219ENST00000606749 RPF2Q9H7B2 306 aaKnown RBP7.05□□□□□ -1.28
CUX1-219ENST00000606749 IL1RL2Q9HB29 575 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 PRM3Q9NNZ6 103 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 DMRT3Q9NQL9 472 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 COPS7AQ9UBW8 275 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 TSC22D4Q9Y3Q8 395 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 ATG4BQ9Y4P1 393 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 PCDHGA11Q9Y5H2 935 aa7.05□□□□□ -1.28
CUX1-219ENST00000606749 EML6Q6ZMW3 1958 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 CSMD2Q7Z408 3487 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 A0A1W2PR48 441 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 OR14I1A6ND48 311 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 LRRC14BA6NHZ5 514 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 NPIPA2E9PIF3 369 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 NPIPA3F8WFD2 350 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 H0YIV9 168 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 ACOT7O00154 380 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 HRKO00198 91 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 PLPP1O14494 284 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 KLK8O60259 260 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 SUSD5O60279 629 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 UGDHO60701 494 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 EEDO75530 441 aaKnown RBP7.04□□□□□ -1.28
CUX1-219ENST00000606749 PRKRAO75569 313 aaKnown RBP7.04□□□□□ -1.28
CUX1-219ENST00000606749 TOXO94900 526 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 KLHL2O95198 593 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 IGHG3P01860 377 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 IGKV3-11P04433 115 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 P04436 131 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 CCL3P10147 92 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 COX7A2P14406 83 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 CAPN3P20807 821 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 CHRNB4P30926 498 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 TLX1P31314 330 aaPredicted RBP7.04□□□□□ -1.28
CUX1-219ENST00000606749 BSGP35613 385 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 MAGEA5P43359 124 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 DNASE1L1P49184 302 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 RAP1GDS1P52306 607 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 ARFIP1P53367 373 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 HNRNPH2P55795 449 aaKnown RBP7.04□□□□□ -1.28
CUX1-219ENST00000606749 RPS13P62277 151 aaKnown RBP7.04□□□□□ -1.28
CUX1-219ENST00000606749 SLC7A5Q01650 507 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 FOLH1Q04609 750 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 DDX39BQ13838 428 aaKnown RBP7.04□□□□□ -1.28
CUX1-219ENST00000606749 SLC10A1Q14973 349 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 SETDB1Q15047 1291 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 PCBP2Q15366 365 aaKnown RBP eCLIP7.04□□□□□ -1.281e-6■■■■■ 65.3
CUX1-219ENST00000606749 FAM83EQ2M2I3 478 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 HYAL4Q2M3T9 481 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 SLC22A10Q63ZE4 541 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 MRM1Q6IN84 353 aaKnown RBP7.04□□□□□ -1.28
CUX1-219ENST00000606749 LYPD8Q6UX82 237 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 MEX3BQ6ZN04 569 aaKnown RBP7.04□□□□□ -1.28
CUX1-219ENST00000606749 GK5Q6ZS86 529 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 FAM47EQ6ZV65 393 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 TRILQ7L0X0 811 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 ZNF572Q7Z3I7 529 aaPredicted RBP7.04□□□□□ -1.28
CUX1-219ENST00000606749 MYLK4Q86YV6 388 aaPredicted RBP7.04□□□□□ -1.28
CUX1-219ENST00000606749 CCDC71Q8IV32 467 aaPredicted RBP7.04□□□□□ -1.28
CUX1-219ENST00000606749 C9orf40Q8IXQ3 194 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 C17orf53Q8N3J3 647 aaPredicted RBP7.04□□□□□ -1.28
CUX1-219ENST00000606749 SLC15A4Q8N697 577 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 TMEM251Q8N6I4 163 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 DOK4Q8TEW6 326 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 ASB5Q8WWX0 329 aa7.04□□□□□ -1.28
CUX1-219ENST00000606749 MRRFQ96E11 262 aaKnown RBP7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms