RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 FBF1Q8TES7 1133 aa16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 ZNF721Q8TF20 911 aa16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 NXNL1Q96CM4 212 aa16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 CMTM7Q96FZ5 175 aa16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 RBM18Q96H35 190 aaKnown RBP16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 SENP5Q96HI0 755 aaPredicted RBP16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 MTERF1Q99551 399 aaKnown RBP16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 CNPPD1Q9BV87 410 aa16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 MCCC2Q9HCC0 563 aa16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 SEMA4BQ9NPR2 832 aaPredicted RBP16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 TUBA8Q9NY65 449 aaPredicted RBP16.27■□□□□ 0.2
SHKBP1-223ENST00000600552 HRKO00198 91 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 FANCGO15287 622 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 DYRK3O43781 588 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 LRATO95237 230 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 LTA4HP09960 611 aaKnown RBP16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 SLC35E2BP0CK96 405 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 EPB42P16452 691 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 MAGEA4P43358 317 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 TRADDQ15628 312 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 ZKSCAN8Q15776 578 aaPredicted RBP16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 UAP1Q16222 522 aaPredicted RBP16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 NDUFAF5Q5TEU4 345 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 C18orf63Q68DL7 685 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 RGS9BPQ6ZS82 235 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 ACAD11Q709F0 780 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 KCTD4Q8WVF5 259 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 ANP32BQ92688 251 aaKnown RBP16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 RGMAQ96B86 450 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 C14orf79Q96F83 325 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 JSRP1Q96MG2 331 aaPredicted RBP16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 GAL3ST4Q96RP7 486 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 RPF2Q9H7B2 306 aaKnown RBP16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 IL1RL2Q9HB29 575 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 NPDC1Q9NQX5 325 aaPredicted RBP16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 PLSCR2Q9NRY7 297 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 IGSF5Q9NSI5 407 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 UTP11Q9Y3A2 253 aaKnown RBP16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 HCFC1P51610 2035 aa16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 PHF3Q92576 2039 aaKnown RBP16.26■□□□□ 0.19
SHKBP1-223ENST00000600552 SYNDIG1LA6NDD5 238 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 LRRC14BA6NHZ5 514 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 GLOD5A6NK44 160 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 WASHC1A8K0Z3 465 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 GFAPP14136 432 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 CAPN3P20807 821 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 ACVR2AP27037 513 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 CRABP2P29373 138 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 TLX1P31314 330 aaPredicted RBP16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 ARL1P40616 181 aaPredicted RBP16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 CASP2P42575 452 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 STT3AP46977 705 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 MAN2A2P49641 1150 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 RPS13P62277 151 aaKnown RBP16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 IRF9Q00978 393 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 FOLH1Q04609 750 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 ZNF267Q14586 743 aaPredicted RBP16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 SLC10A1Q14973 349 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 PIGGQ5H8A4 983 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 DEPDC1Q5TB30 811 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 PRAMEF20Q5VT98 475 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 GPR180Q86V85 440 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 LAS2Q8IYD9 372 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 FAM109AQ8N4B1 249 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 FAM13CQ8NE31 585 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 HUS1BQ8NHY5 278 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 SGCZQ96LD1 299 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 CENPKQ9BS16 269 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 ZDHHC11Q9H8X9 412 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 ACTR8Q9H981 624 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 ACOT9Q9Y305 439 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 ATG4BQ9Y4P1 393 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 NINQ8N4C6 2090 aa16.25■□□□□ 0.19
SHKBP1-223ENST00000600552 IQANK1A0A1B0GTG1 560 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 OR10H2O60403 315 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 KERAO60938 352 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 TOXO94900 526 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 GLSO94925 669 aaPredicted RBP16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 GSTA2P09210 222 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 HERVK_113P63132 956 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 ERVK-8P63133 956 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 KCNJ2P63252 427 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 MYBPHQ13203 477 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 PFKFB4Q16877 469 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 MROH9Q5TGP6 573 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 SLC22A10Q63ZE4 541 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 GRHL2Q6ISB3 625 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 TRILQ7L0X0 811 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 TMEM200AQ86VY9 491 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 C9orf40Q8IXQ3 194 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 OR8K3Q8NH51 312 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 SLC22A8Q8TCC7 542 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 FBXO25Q8TCJ0 367 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 ATOH8Q96SQ7 321 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 ZNF559Q9BR84 538 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 ERVK-6Q9BXR3 956 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 CPSF2Q9P2I0 782 aaKnown RBP16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 ERVK-19Q9WJR5 959 aa16.24■□□□□ 0.19
SHKBP1-223ENST00000600552 ANKRD17O75179 2603 aaKnown RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms