RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 CDC26Q8NHZ8 85 aa11.95□□□□□ -0.5
UPF1-208ENST00000600012 CHTF18Q8WVB6 975 aa11.95□□□□□ -0.5
UPF1-208ENST00000600012 TEX37Q96LM6 180 aa11.95□□□□□ -0.5
UPF1-208ENST00000600012 C5orf34Q96MH7 638 aa11.95□□□□□ -0.5
UPF1-208ENST00000600012 OR2A5Q96R48 311 aa11.95□□□□□ -0.5
UPF1-208ENST00000600012 ZFYVE21Q9BQ24 234 aa11.95□□□□□ -0.5
UPF1-208ENST00000600012 NDC1Q9BTX1 674 aa11.95□□□□□ -0.5
UPF1-208ENST00000600012 SPRTNQ9H040 489 aaPredicted RBP11.95□□□□□ -0.5
UPF1-208ENST00000600012 KLHL31Q9H511 634 aa11.95□□□□□ -0.5
UPF1-208ENST00000600012 ZNF552Q9H707 407 aaPredicted RBP11.95□□□□□ -0.5
UPF1-208ENST00000600012 SDR39U1Q9NRG7 319 aaPredicted RBP11.95□□□□□ -0.5
UPF1-208ENST00000600012 NMRK1Q9NWW6 199 aa11.95□□□□□ -0.5
UPF1-208ENST00000600012 IRAK4Q9NWZ3 460 aa11.95□□□□□ -0.5
UPF1-208ENST00000600012 ASIC5Q9NY37 505 aa11.95□□□□□ -0.5
UPF1-208ENST00000600012 CCDC167Q9P0B6 97 aa11.95□□□□□ -0.5
UPF1-208ENST00000600012 DHCR7Q9UBM7 475 aaKnown RBP11.95□□□□□ -0.5
UPF1-208ENST00000600012 BAIAP2L1Q9UHR4 511 aa11.95□□□□□ -0.5
UPF1-208ENST00000600012 RUVBL1Q9Y265 456 aaKnown RBP11.95□□□□□ -0.5
UPF1-208ENST00000600012 TMED5Q9Y3A6 229 aa11.95□□□□□ -0.5
UPF1-208ENST00000600012 SVILO95425 2214 aa11.95□□□□□ -0.5
UPF1-208ENST00000600012 ZGRF1Q86YA3 2104 aa11.95□□□□□ -0.5
UPF1-208ENST00000600012 CENPEQ02224 2701 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 LOC105369274A0A096LPK9 316 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 LOC102723532A0A0G2JNH3 316 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 ANKUB1A6NFN9 424 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 ENO4A6NNW6 628 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 H0YGG7 62 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 NR5A2O00482 541 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 SLC22A2O15244 555 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 PCDH7O60245 1069 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 CNOT3O75175 753 aaKnown RBP11.94□□□□□ -0.5
UPF1-208ENST00000600012 MYO1DO94832 1006 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 SEMA3DO95025 777 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 CLDN1O95832 211 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 GBAP04062 536 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 T-ENOLP0DO92 83 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 PRPS2P11908 318 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 COX4I1P13073 169 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 GSTM2P28161 218 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 DCTP40126 519 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 ARF3P61204 181 aaPredicted RBP11.94□□□□□ -0.5
UPF1-208ENST00000600012 NKAIN1Q4KMZ8 207 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 ZNF787Q6DD87 383 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 MRPL14Q6P1L8 145 aaKnown RBP11.94□□□□□ -0.5
UPF1-208ENST00000600012 Q6ZS92 163 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 PPP1R32Q7Z5V6 425 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 SNX32Q86XE0 403 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 OR4N4Q8N0Y3 316 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 ZNF655Q8N720 491 aaPredicted RBP11.94□□□□□ -0.5
UPF1-208ENST00000600012 TRPV3Q8NET8 790 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 NUDT8Q8WV74 236 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 SLC13A3Q8WWT9 602 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 NACC2Q96BF6 587 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 C11orf24Q96F05 449 aaPredicted RBP11.94□□□□□ -0.5
UPF1-208ENST00000600012 TSSK3Q96PN8 268 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 ATP13A2Q9NQ11 1180 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 ZIM2Q9NZV7 527 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 TAGLN3Q9UI15 199 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 PLCL2Q9UPR0 1127 aa11.94□□□□□ -0.5
UPF1-208ENST00000600012 LOC100653049A0A140TA62 436 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 LRIT2A6NDA9 550 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 ANKRD28O15084 1053 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 KRT34O76011 436 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 LRATO95237 230 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 B3GALT4O96024 378 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 EIF2S1P05198 315 aaKnown RBP11.93□□□□□ -0.5
UPF1-208ENST00000600012 KLK1P06870 262 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 CTSBP07858 339 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 UMODP07911 640 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 SLC35G6P0C7Q6 338 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 ATXN8OSP0DMR3 200 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 ESRRAP11474 423 aaPredicted RBP11.93□□□□□ -0.5
UPF1-208ENST00000600012 ACPPP15309 386 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 COL8A1P27658 744 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 IL12AP29459 219 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 ADSLP30566 484 aaPredicted RBP11.93□□□□□ -0.5
UPF1-208ENST00000600012 BSGP35613 385 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 MRPL19P49406 292 aaKnown RBP11.93□□□□□ -0.5
UPF1-208ENST00000600012 PLA2G16P53816 162 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 VSX2P58304 361 aaPredicted RBP11.93□□□□□ -0.5
UPF1-208ENST00000600012 SNRPNP63162 240 aaKnown RBP11.93□□□□□ -0.5
UPF1-208ENST00000600012 RGS1Q08116 209 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 BNIP1Q12981 228 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 AIMP2Q13155 320 aaKnown RBP11.93□□□□□ -0.5
UPF1-208ENST00000600012 SLC9A5Q14940 896 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 HERC3Q15034 1050 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 HKDC1Q2TB90 917 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 CRB2Q5IJ48 1285 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 UBE3DQ7Z6J8 389 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 FUNDC1Q8IVP5 155 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 DNAJC22Q8N4W6 341 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 KRTCAP2Q8N6L1 136 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 AMER3Q8N944 861 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 KCT2Q8NC54 265 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 ZCCHC10Q8TBK6 192 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 NT5CQ8TCD5 201 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 RERGQ96A58 199 aaPredicted RBP11.93□□□□□ -0.5
UPF1-208ENST00000600012 FKBP10Q96AY3 582 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 RGMAQ96B86 450 aa11.93□□□□□ -0.5
UPF1-208ENST00000600012 MS4A6EQ96DS6 147 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms