RNA–Protein interactions for RNA: ENST00000588915.1

VMP1-209, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 231 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-209ENST00000588915 MS4A8Q9BY19 250 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 POLDIP3Q9BY77 421 aaKnown RBP12.91□□□□□ -0.34
VMP1-209ENST00000588915 RASSF1Q9NS23 344 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 ST6GALNAC2Q9UJ37 374 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 PTBP2Q9UKA9 531 aaKnown RBP12.91□□□□□ -0.34
VMP1-209ENST00000588915 BOKQ9UMX3 212 aaPredicted RBP12.91□□□□□ -0.34
VMP1-209ENST00000588915 ABCA4P78363 2273 aa12.91□□□□□ -0.34
VMP1-209ENST00000588915 EML6Q6ZMW3 1958 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 NCF1BA6NI72 391 aaPredicted RBP12.9□□□□□ -0.34
VMP1-209ENST00000588915 NCF1CA8MVU1 366 aaPredicted RBP12.9□□□□□ -0.34
VMP1-209ENST00000588915 SEC31AO94979 1220 aaKnown RBP12.9□□□□□ -0.34
VMP1-209ENST00000588915 NADKO95544 446 aaPredicted RBP12.9□□□□□ -0.34
VMP1-209ENST00000588915 NCF1P14598 390 aaPredicted RBP12.9□□□□□ -0.34
VMP1-209ENST00000588915 TCP1P17987 556 aaKnown RBP12.9□□□□□ -0.34
VMP1-209ENST00000588915 KIR2DL3P43628 341 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 STT3AP46977 705 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 ARFIP1P53367 373 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 IRF8Q02556 426 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 ASPHQ12797 758 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 ADGRD1Q6QNK2 874 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 UBE3DQ7Z6J8 389 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 LAS2Q8IYD9 372 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 LRRC25Q8N386 305 aaPredicted RBP12.9□□□□□ -0.34
VMP1-209ENST00000588915 BBOF1Q8ND07 529 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 FBXO36Q8NEA4 188 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 ZNF473Q8WTR7 871 aaKnown RBP12.9□□□□□ -0.34
VMP1-209ENST00000588915 TANKQ92844 425 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 SPACA9Q96E40 222 aaPredicted RBP12.9□□□□□ -0.34
VMP1-209ENST00000588915 FBXL20Q96IG2 436 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 PWWP2AQ96N64 755 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 PHACTR1Q9C0D0 580 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 EXO5Q9H790 373 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 ZFP64Q9NPA5 681 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 CCM2LQ9NUG4 571 aaPredicted RBP12.9□□□□□ -0.34
VMP1-209ENST00000588915 ZNF358Q9NW07 568 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 ALKBH4Q9NXW9 302 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 ADGRE2Q9UHX3 823 aa12.9□□□□□ -0.34
VMP1-209ENST00000588915 FOXD3Q9UJU5 478 aaPredicted RBP12.9□□□□□ -0.34
VMP1-209ENST00000588915 ZNF469Q96JG9 3925 aaPredicted RBP12.89□□□□□ -0.35
VMP1-209ENST00000588915 MYOCOSA0A1B0GUC4 107 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 ANKRD33BA6NCL7 494 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 AHRRA9YTQ3 701 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 FAM155BO75949 473 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 CELA3AP09093 270 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 CCDC166P0CW27 439 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 FOSL1P15407 271 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 CD22P20273 847 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 CPN2P22792 545 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 SERPINB3P29508 390 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 MSH2P43246 934 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 HSPA7P48741 367 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 PPP2R2AP63151 447 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 PLIN5Q00G26 463 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 PDIA2Q13087 525 aaKnown RBP12.89□□□□□ -0.35
VMP1-209ENST00000588915 CHIT1Q13231 466 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 SF3B4Q15427 424 aaKnown RBP eCLIP12.89□□□□□ -0.35
VMP1-209ENST00000588915 FBXL19-AS1Q494R0 122 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 TBCELQ5QJ74 424 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 ADNP2Q6IQ32 1131 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 LYPD8Q6UX82 237 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 CYS1Q717R9 158 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 CAMKMTQ7Z624 323 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 ANKMY2Q8IV38 441 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 SNX31Q8N9S9 440 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 NEIL3Q8TAT5 605 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 NRGNQ92686 78 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 CMTM7Q96FZ5 175 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 DGAT2Q96PD7 388 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 PELOQ9BRX2 385 aaKnown RBP12.89□□□□□ -0.35
VMP1-209ENST00000588915 CD244Q9BZW8 370 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 CLEC4MQ9H2X3 399 aaPredicted RBP12.89□□□□□ -0.35
VMP1-209ENST00000588915 RPF2Q9H7B2 306 aaKnown RBP12.89□□□□□ -0.35
VMP1-209ENST00000588915 ZNF703Q9H7S9 590 aaPredicted RBP12.89□□□□□ -0.35
VMP1-209ENST00000588915 SEMA4BQ9NPR2 832 aaPredicted RBP12.89□□□□□ -0.35
VMP1-209ENST00000588915 CD274Q9NZQ7 290 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 SPRR3Q9UBC9 169 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 ZNF629Q9UEG4 869 aaPredicted RBP12.89□□□□□ -0.35
VMP1-209ENST00000588915 IKBKGQ9Y6K9 419 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 NIPBLQ6KC79 2804 aaeCLIP12.89□□□□□ -0.35
VMP1-209ENST00000588915 NAV3Q8IVL0 2385 aa12.89□□□□□ -0.35
VMP1-209ENST00000588915 ANKHD1Q8IWZ3 2542 aaKnown RBP12.89□□□□□ -0.35
VMP1-209ENST00000588915 DVL2O14641 736 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 TP73O15350 636 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 ZSCAN12O43309 604 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 DIAPH2O60879 1101 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 EPPINO95925 133 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 CD1DP15813 335 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 EPORP19235 508 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 KLK2P20151 261 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 ENDOUP21128 410 aaKnown RBP12.88□□□□□ -0.35
VMP1-209ENST00000588915 DNASE1P24855 282 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 TLX1P31314 330 aaPredicted RBP12.88□□□□□ -0.35
VMP1-209ENST00000588915 CEACAM8P31997 349 aaPredicted RBP12.88□□□□□ -0.35
VMP1-209ENST00000588915 GALNSP34059 522 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 PIGAP37287 484 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 KCNJ2P63252 427 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 DR1Q01658 176 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 DAZAP2Q15038 168 aaPredicted RBP12.88□□□□□ -0.35
VMP1-209ENST00000588915 SPRED3Q2MJR0 410 aa12.88□□□□□ -0.35
VMP1-209ENST00000588915 DEPDC1Q5TB30 811 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms