RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	GPN2	Q9H9Y4	310 aa	Predicted RBP	11.1	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	GIN1	Q9NXP7	522 aa		11.1	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	NUDT4	Q9NZJ9	180 aa		11.1	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	TMEM9	Q9P0T7	183 aa		11.1	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	C3orf18	Q9UK00	162 aa		11.1	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ORC6	Q9Y5N6	252 aa		11.1	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	GMPPB	Q9Y5P6	360 aa		11.1	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	SMAD9	O15198	467 aa	Known RBP	11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	TBX1	O43435	398 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	UGT2B11	O75310	529 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZNF821	O75541	412 aa	Predicted RBP	11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	PRG2	P13727	222 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	EPOR	P19235	508 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	HMGCL	P35914	325 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CAMK2D	Q13557	499 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	GBX1	Q14549	363 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	TCEA2	Q15560	299 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	MPPE1	Q53F39	396 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ARHGAP15	Q53QZ3	475 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	PRSS36	Q5K4E3	855 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ATAT1	Q5SQI0	421 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ADNP2	Q6IQ32	1131 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	SERPINA13P	Q6UXR4	307 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CLECL1	Q8IZS7	167 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	C11orf65	Q8NCR3	313 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	SELENOM	Q8WWX9	145 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	TXN2	Q99757	166 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	KAT8	Q9H7Z6	458 aa	Known RBP	11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	MCCC2	Q9HCC0	563 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CRLS1	Q9UJA2	301 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	INTS6	Q9UL03	887 aa	Known RBP	11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	TRIOBP	Q9H2D6	2365 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	JUNB	P17275	347 aa	Predicted RBP	11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CRISP3	P54108	245 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	UAP1L1	Q3KQV9	507 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ZNF691	Q5VV52	312 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063		Q6ZNB5	142 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ADHFE1	Q8IWW8	467 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	BEND7	Q8N7W2	519 aa	Predicted RBP	11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CYB5D2	Q8WUJ1	264 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	APIP	Q96GX9	242 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	CCM2	Q9BSQ5	444 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	MUC13	Q9H3R2	512 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	MTG2	Q9H4K7	406 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	DCAF13	Q9NV06	445 aa	Known RBP	11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	EXTL2	Q9UBQ6	330 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	PPT2	Q9UMR5	302 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	ERVK-11	Q9UQG0	969 aa		11.09	□□□□□ -0.63
CDK5RAP3-231	ENST00000584063	KNL1	Q8NG31	2342 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	CCDC88C	Q9P219	2028 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	SOBP	A7XYQ1	873 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	RGS14	O43566	566 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	PRAMEF4	O60810	478 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	MYO1D	O94832	1006 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	ADH1C	P00326	375 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	HSD3B1	P14060	373 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	TYR	P14679	529 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	S100A3	P33764	101 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	SLC7A9	P82251	487 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	B4GALNT1	Q00973	533 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	FOXO1	Q12778	655 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	TSTA3	Q13630	321 aa	Predicted RBP	11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	ARHGAP19	Q14CB8	494 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	CLCA4	Q14CN2	919 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	RUNDC3A	Q59EK9	446 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	PRAMEF9	Q5VWM5	478 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	MTFR2	Q6P444	385 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	HTR3D	Q70Z44	454 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	EFL1	Q7Z2Z2	1120 aa	Known RBP	11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	P2RY8	Q86VZ1	359 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	CLIP4	Q8N3C7	705 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	TERB1	Q8NA31	727 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	FAM83F	Q8NEG4	500 aa	Predicted RBP	11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	DTD1	Q8TEA8	209 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	VOPP1	Q96AW1	172 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	MAGED4	Q96JG8	741 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	MTERF1	Q99551	399 aa	Known RBP	11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	HMG20A	Q9NP66	347 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	TAS2R16	Q9NYV7	291 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	GON4L	Q3T8J9	2241 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	SERTM2	A0A1B0GWG4	89 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	LOC390937	A0A1W2PQ73	354 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	MANBA	O00462	879 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	KPNA4	O00629	521 aa	Predicted RBP	11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	PFDN6	O15212	129 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	TRBC1	P01850	177 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	GBA	P04062	536 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	CEBPB	P17676	345 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	GAL	P22466	123 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	GRK6	P43250	576 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	ERVK-21	P61565	698 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	TSPAN5	P62079	268 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	BCL2L1	Q07817	233 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	ADAM15	Q13444	863 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	ZNF846	Q147U1	533 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	PCBP2	Q15366	365 aa	Known RBP eCLIP	11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	ATP13A5	Q4VNC0	1218 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	SAPCD1	Q5SSQ6	148 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	FJX1	Q86VR8	437 aa		11.08	□□□□□ -0.64
CDK5RAP3-231	ENST00000584063	PLD3	Q8IV08	490 aa		11.08	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms