RNA–Protein interactions for RNA: ENST00000581631.1

SMCHD1-206, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 729 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-206ENST00000581631 SLC17A1Q14916 467 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 C17orf58Q2M2W7 97 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 RSBN1Q5VWQ0 802 aaPredicted RBP2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 CAPN13Q6MZZ7 669 aaPredicted RBP2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 TMED8Q6PL24 325 aaPredicted RBP2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 PAMR1Q6UXH9 720 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 ZNF600Q6ZNG1 722 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 ZNF444Q8N0Y2 327 aaPredicted RBP2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 SLC22A18ASQ8N1D0 253 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 ZNF491Q8N8L2 437 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 CCDC197Q8NCU1 140 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 GTSF1Q8WW33 167 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 MR1Q95460 341 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 ZBED6CLQ96FA7 236 aaPredicted RBP2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 PCED1BQ96HM7 432 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 PARK7Q99497 189 aaKnown RBP2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 ZNF559Q9BR84 538 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 TEX13BQ9BXU2 312 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 EDEM3Q9BZQ6 932 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 ZBP1Q9H171 429 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 ZNF446Q9NWS9 450 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 PLEK2Q9NYT0 353 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 Q9UF83 564 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 EXOC6BQ9Y2D4 811 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 OR1A2Q9Y585 309 aa2.34□□□□□ -2.03
SMCHD1-206ENST00000581631 SLC30A4O14863 429 aa2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 SYT7O43581 403 aa2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 TBCAO75347 108 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 FOSL2P15408 326 aa2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 OR1D2P34982 312 aa2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 RPL27P61353 136 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 GSTO1P78417 241 aa2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 ZNF79Q15937 498 aa2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 ACKR1Q16570 336 aa2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 DCAF12Q5T6F0 453 aa2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 AGAP6Q5VW22 663 aa2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 GLRX5Q86SX6 157 aa2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 BEST4Q8NFU0 473 aa2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 SPATA18Q8TC71 538 aa2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 SNRNP27Q8WVK2 155 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 FAM162AQ96A26 154 aa2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 MRPL24Q96A35 216 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 ESAMQ96AP7 390 aa2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 NTNG2Q96CW9 530 aa2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 RBM18Q96H35 190 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 THUMPD3Q9BV44 507 aaKnown RBP2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 LRRC2Q9BYS8 371 aa2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 SRD5A3Q9H8P0 318 aa2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 TERF2IPQ9NYB0 399 aa2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 RCOR3Q9P2K3 495 aaPredicted RBP2.33□□□□□ -2.04
SMCHD1-206ENST00000581631 KLF18A0A0U1RQI7 1052 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 ATP6AP2A0A1C7CYW4 349 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 MAGEB16A2A368 324 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 SAP18O00422 153 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 CCSO14618 274 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 CHUKO15111 745 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 TIMM44O43615 452 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 KIAA0513O60268 411 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 TSC22D2O75157 780 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 NME6O75414 186 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 CSDE1O75534 798 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 ANXA9O76027 345 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 SLU7O95391 586 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 CCDC159P0C7I6 412 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 CASTP20810 708 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 GLRA1P23415 457 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 FASP25445 335 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 MAGEB1P43366 347 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 LCP2Q13094 533 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 SPHARQ15513 63 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 CNPY1Q3B7I2 92 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 SNRNP48Q6IEG0 339 aaKnown RBP2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 CGB2Q6NT52 195 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 VSIG1Q86XK7 387 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 WDR49Q8IV35 697 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 OR1K1Q8NGR3 316 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 AFAP1L1Q8TED9 768 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 GANCQ8TET4 914 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 DEPDC1BQ8WUY9 529 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 TCP11Q8WWU5 503 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 C16orf58Q96GQ5 468 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 RAB40CQ96S21 281 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 CITED2Q99967 270 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 DEFB126Q9BYW3 111 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 TUFT1Q9NNX1 390 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 ARMCX3Q9UH62 379 aaPredicted RBP2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 PSORS1C1Q9UIG5 152 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 RNF24Q9Y225 148 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 FER1L5A0AVI2 2057 aa2.32□□□□□ -2.04
SMCHD1-206ENST00000581631 A0A087X0K7 114 aa2.31□□□□□ -2.04
SMCHD1-206ENST00000581631 H0Y9J4 135 aa2.31□□□□□ -2.04
SMCHD1-206ENST00000581631 RAD51DO75771 328 aa2.31□□□□□ -2.04
SMCHD1-206ENST00000581631 FCGR3AP08637 254 aa2.31□□□□□ -2.04
SMCHD1-206ENST00000581631 HSD17B1P14061 328 aa2.31□□□□□ -2.04
SMCHD1-206ENST00000581631 GPX3P22352 226 aa2.31□□□□□ -2.04
SMCHD1-206ENST00000581631 MTIF2P46199 727 aaKnown RBP2.31□□□□□ -2.04
SMCHD1-206ENST00000581631 MFGE8Q08431 387 aaPredicted RBP2.31□□□□□ -2.04
SMCHD1-206ENST00000581631 EMC2Q15006 297 aa2.31□□□□□ -2.04
SMCHD1-206ENST00000581631 TTC31Q49AM3 519 aaPredicted RBP2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms