RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 DTWD1Q8N5C7 304 aa12.9□□□□□ -0.34
CCDC40-209ENST00000573474 RNF148Q8N7C7 305 aa12.9□□□□□ -0.34
CCDC40-209ENST00000573474 ZNF681Q96N22 645 aa12.9□□□□□ -0.34
CCDC40-209ENST00000573474 AMDHD1Q96NU7 426 aa12.9□□□□□ -0.34
CCDC40-209ENST00000573474 ECSITQ9BQ95 431 aa12.9□□□□□ -0.34
CCDC40-209ENST00000573474 NEUROD4Q9HD90 331 aa12.9□□□□□ -0.34
CCDC40-209ENST00000573474 HCN3Q9P1Z3 774 aa12.9□□□□□ -0.34
CCDC40-209ENST00000573474 NDOR1Q9UHB4 597 aa12.9□□□□□ -0.34
CCDC40-209ENST00000573474 MRPS33Q9Y291 106 aaKnown RBP12.9□□□□□ -0.34
CCDC40-209ENST00000573474 PCDHGA1Q9Y5H4 931 aa12.9□□□□□ -0.34
CCDC40-209ENST00000573474 GMEB1Q9Y692 573 aa12.9□□□□□ -0.34
CCDC40-209ENST00000573474 FRYLO94915 3013 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 A0A1B0GX78 115 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 EFCAB7A8K855 629 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 PROB1E7EW31 1015 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 FAM227AF5H4B4 570 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 CLIC1O00299 241 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 SORBS2O94875 1100 aaKnown RBP12.89□□□□□ -0.35
CCDC40-209ENST00000573474 GPR75O95800 540 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 ABCB1P08183 1280 aaPredicted RBP12.89□□□□□ -0.35
CCDC40-209ENST00000573474 UQCRC2P22695 453 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 MPIP34949 423 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 FEN1P39748 380 aaKnown RBP12.89□□□□□ -0.35
CCDC40-209ENST00000573474 XKP51811 444 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 NCBP2P52298 156 aaKnown RBP eCLIP12.89□□□□□ -0.35
CCDC40-209ENST00000573474 IL11RAQ14626 422 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 C16orf72Q14CZ0 275 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 PRAMEF17Q5VTA0 474 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 C1orf146Q5VVC0 180 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 ZNF551Q7Z340 670 aaPredicted RBP12.89□□□□□ -0.35
CCDC40-209ENST00000573474 ZNF595Q8IYB9 648 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 CCDC116Q8IYX3 515 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 PSMA8Q8TAA3 256 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 ZFP90Q8TF47 636 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 CCDC124Q96CT7 223 aaKnown RBP12.89□□□□□ -0.35
CCDC40-209ENST00000573474 CNRIP1Q96F85 164 aaPredicted RBP12.89□□□□□ -0.35
CCDC40-209ENST00000573474 AURKBQ96GD4 344 aaPredicted RBP12.89□□□□□ -0.35
CCDC40-209ENST00000573474 TRIM8Q9BZR9 551 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 SLC7A5P2Q9GIP4 190 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 GLIPR2Q9H4G4 154 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 DENND2DQ9H6A0 471 aaPredicted RBP12.89□□□□□ -0.35
CCDC40-209ENST00000573474 TPT1P8Q9HAU6 139 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 OCIAD1Q9NX40 245 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 AKAP7Q9P0M2 348 aaPredicted RBP12.89□□□□□ -0.35
CCDC40-209ENST00000573474 DHCR7Q9UBM7 475 aaKnown RBP12.89□□□□□ -0.35
CCDC40-209ENST00000573474 SUCOQ9UBS9 1254 aaKnown RBP12.89□□□□□ -0.35
CCDC40-209ENST00000573474 CORO2BQ9UQ03 480 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 POMPQ9Y244 141 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 SCN3AQ9NY46 2000 aa12.89□□□□□ -0.35
CCDC40-209ENST00000573474 ASCC3Q8N3C0 2202 aaKnown RBP12.88□□□□□ -0.35
CCDC40-209ENST00000573474 OTOGLQ3ZCN5 2332 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 CLDN4O14493 209 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 KRT75O95678 551 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 HBQ1P09105 142 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 C8orf89P0DMQ9 161 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 FGF5P12034 268 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 PORP16435 677 aaPredicted RBP12.88□□□□□ -0.35
CCDC40-209ENST00000573474 TCN1P20061 433 aaPredicted RBP12.88□□□□□ -0.35
CCDC40-209ENST00000573474 IL10P22301 178 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 PPP2R1BP30154 601 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 GSK3BP49841 420 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 PDX1P52945 283 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 MAT1AQ00266 395 aaKnown RBP12.88□□□□□ -0.35
CCDC40-209ENST00000573474 MC2RQ01718 297 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 TRAP1Q12931 704 aaKnown RBP12.88□□□□□ -0.35
CCDC40-209ENST00000573474 HSPB3Q12988 150 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 GAB1Q13480 694 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 DSG2Q14126 1118 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 TRIM25Q14258 630 aaKnown RBP12.88□□□□□ -0.35
CCDC40-209ENST00000573474 ZNF750Q32MQ0 723 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 CCDC157Q569K6 752 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 RHBDD2Q6NTF9 364 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 MED25Q71SY5 747 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 PPP1R3BQ86XI6 285 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 TMEM126BQ8IUX1 230 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 LRRC25Q8N386 305 aaPredicted RBP12.88□□□□□ -0.35
CCDC40-209ENST00000573474 METTL27Q8N6F8 245 aaPredicted RBP12.88□□□□□ -0.35
CCDC40-209ENST00000573474 TMEM52Q8NDY8 209 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 OR51Q1Q8NH59 317 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 WDR60Q8WVS4 1066 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 TBC1D20Q96BZ9 403 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 PEX11GQ96HA9 241 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 KCTD14Q9BQ13 255 aaPredicted RBP12.88□□□□□ -0.35
CCDC40-209ENST00000573474 DPH2Q9BQC3 489 aaPredicted RBP12.88□□□□□ -0.35
CCDC40-209ENST00000573474 SLC35A5Q9BS91 424 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 TRIM4Q9C037 500 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 STRADBQ9C0K7 418 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 RAD21L1Q9H4I0 556 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 ALG2Q9H553 416 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 IKZF5Q9H5V7 419 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 CXorf36Q9H7Y0 433 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 KAT8Q9H7Z6 458 aaKnown RBP12.88□□□□□ -0.35
CCDC40-209ENST00000573474 ZNF304Q9HCX3 659 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 FBXO8Q9NRD0 319 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 SEMA3GQ9NS98 782 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 BCAP29Q9UHQ4 241 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 TMEM184BQ9Y519 407 aaPredicted RBP12.88□□□□□ -0.35
CCDC40-209ENST00000573474 PCDHB3Q9Y5E6 796 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 SNX8Q9Y5X2 465 aa12.88□□□□□ -0.35
CCDC40-209ENST00000573474 MAU2Q9Y6X3 613 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms