RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 CRTC2Q53ET0 693 aaPredicted RBP8.71□□□□□ -1.02
VPS35-211ENST00000569950 ANKRD26P1Q6NSI1 321 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 FAM180BQ6P0A1 224 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 CYP20A1Q6UW02 462 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 ANKRD37Q7Z713 158 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 MRGPREQ86SM8 312 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 HOMEZQ8IX15 550 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 OR4N5Q8IXE1 308 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 LIX1Q8N485 282 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 IL22RA1Q8N6P7 574 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 EFCAB3Q8N7B9 438 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 NFAM1Q8NET5 270 aaPredicted RBP8.71□□□□□ -1.02
VPS35-211ENST00000569950 OR11G2Q8NGC1 345 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 SUN3Q8TAQ9 357 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 ADAMTS18Q8TE60 1221 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 STARD8Q92502 1023 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 C8orf44Q96CB5 159 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 CNRIP1Q96F85 164 aaPredicted RBP8.71□□□□□ -1.02
VPS35-211ENST00000569950 CHMP6Q96FZ7 201 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 CRELD1Q96HD1 420 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 MARK4Q96L34 752 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 TSSK3Q96PN8 268 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 CENPKQ9BS16 269 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 CCDC28BQ9BUN5 200 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 RPF2Q9H7B2 306 aaKnown RBP8.71□□□□□ -1.02
VPS35-211ENST00000569950 TCF7L2Q9NQB0 619 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 PRDM9Q9NQV7 894 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 RIC8BQ9NVN3 520 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 PHF11Q9UIL8 331 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 DCTN4Q9UJW0 460 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 C3orf18Q9UK00 162 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 ADAM21Q9UKJ8 722 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 NXT1Q9UKK6 140 aaKnown RBP8.71□□□□□ -1.02
VPS35-211ENST00000569950 MKL2Q9ULH7 1088 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 MMACHCQ9Y4U1 282 aa8.71□□□□□ -1.02
VPS35-211ENST00000569950 SPENQ96T58 3664 aaKnown RBP8.71□□□□□ -1.02
VPS35-211ENST00000569950 A0A088AWK7 358 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 IGHV3-20A0A0C4DH32 117 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 GNG14A0A1W2PPG7 69 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 TMEM8BA6NDV4 472 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 GABRR3A8MPY1 467 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 MYO1GB0I1T2 1018 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 HRKO00198 91 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 PRMT3O60678 531 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 ALOX12BO75342 701 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 VPS4BO75351 444 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 LRATO95237 230 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 CLPSP04118 112 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 VIMP08670 466 aaKnown RBP8.7□□□□□ -1.02
VPS35-211ENST00000569950 DRD2P14416 443 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 DDCP20711 480 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 S1PR1P21453 382 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 ZNF10P21506 573 aaPredicted RBP8.7□□□□□ -1.02
VPS35-211ENST00000569950 PTGER1P34995 402 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 FRKP42685 505 aaPredicted RBP8.7□□□□□ -1.02
VPS35-211ENST00000569950 EMP2P54851 167 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 WNT3P56703 355 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 CLDN8P56748 225 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 SKP1P63208 163 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 GNGT1P63211 74 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 FOLH1Q04609 750 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 OCA2Q04671 838 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 SF3A3Q12874 501 aaKnown RBP eCLIP8.7□□□□□ -1.02
VPS35-211ENST00000569950 DUSP8Q13202 625 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 ATP1A4Q13733 1029 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 IKBIPQ70UQ0 350 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 CAMKMTQ7Z624 323 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 PIGWQ7Z7B1 504 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 FUNDC1Q8IVP5 155 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 FNDC5Q8NAU1 212 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 SIMC1Q8NDZ2 872 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 OR9I1Q8NGQ6 314 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 CEP70Q8NHQ1 597 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 PTPMT1Q8WUK0 201 aaPredicted RBP8.7□□□□□ -1.02
VPS35-211ENST00000569950 GFM2Q969S9 779 aaKnown RBP8.7□□□□□ -1.02
VPS35-211ENST00000569950 IMMP1LQ96LU5 166 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 CNTNAP3BQ96NU0 1288 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 CCNL2Q96S94 520 aaPredicted RBP8.7□□□□□ -1.02
VPS35-211ENST00000569950 CRB3Q9BUF7 120 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 TMEM120AQ9BXJ8 343 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 CNTNAP3Q9BZ76 1288 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 CPNE5Q9HCH3 593 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 PRTFDC1Q9NRG1 225 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 SDR39U1Q9NRG7 319 aaPredicted RBP8.7□□□□□ -1.02
VPS35-211ENST00000569950 MS4A12Q9NXJ0 267 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 EHD3Q9NZN3 535 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 ATP6V1HQ9UI12 483 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 ZNF223Q9UK11 482 aaPredicted RBP8.7□□□□□ -1.02
VPS35-211ENST00000569950 KCND3Q9UK17 655 aa8.7□□□□□ -1.02
VPS35-211ENST00000569950 PPIEQ9UNP9 301 aaKnown RBP8.7□□□□□ -1.02
VPS35-211ENST00000569950 WBP11Q9Y2W2 641 aaKnown RBP8.7□□□□□ -1.02
VPS35-211ENST00000569950 IGHV1-45A0A0A0MS14 117 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 C1orf226A1L170 272 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 GMNCA6NCL1 334 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 ASPDHA6ND91 283 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 SRRM3A6NNA2 597 aaPredicted RBP8.69□□□□□ -1.02
VPS35-211ENST00000569950 C9JVG2 144 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 E9PBE3 544 aa8.69□□□□□ -1.02
VPS35-211ENST00000569950 SCAMP2O15127 329 aaKnown RBP8.69□□□□□ -1.02
VPS35-211ENST00000569950 AKAP10O43572 662 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms