RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 RAB43Q86YS6 212 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 TRIM42Q8IWZ5 723 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 ZNF321PQ8N8H1 164 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 CDC26Q8NHZ8 85 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 DNAJB14Q8TBM8 379 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 LRRC8CQ8TDW0 803 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 TTC9Q92623 222 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 THOC1Q96FV9 657 aaKnown RBP9.17□□□□□ -0.94
CLK3-208ENST00000562626 IMMP1LQ96LU5 166 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 C7orf26Q96N11 449 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 TSSK3Q96PN8 268 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 OR52B2Q96RD2 323 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 EBF4Q9BQW3 602 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 FAM117AQ9C073 453 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 RPF2Q9H7B2 306 aaKnown RBP9.17□□□□□ -0.94
CLK3-208ENST00000562626 AKTIPQ9H8T0 292 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 MEAF6Q9HAF1 191 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 ZNF160Q9HCG1 818 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 PHF11Q9UIL8 331 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 ZNF223Q9UK11 482 aaPredicted RBP9.17□□□□□ -0.94
CLK3-208ENST00000562626 POLHQ9Y253 713 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 MAN2B2Q9Y2E5 1009 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 PCDHA9Q9Y5H5 950 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 NINQ8N4C6 2090 aa9.17□□□□□ -0.94
CLK3-208ENST00000562626 HELZ2Q9BYK8 2649 aaKnown RBP9.17□□□□□ -0.94
CLK3-208ENST00000562626 GNG14A0A1W2PPG7 69 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 CTNSO60931 367 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 LRATO95237 230 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 CHEK2O96017 543 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 CD63P08962 238 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 BCKDHAP12694 445 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 IL10P22301 178 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 JAK1P23458 1154 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 EPHA3P29320 983 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 ST13P50502 369 aaKnown RBP9.16□□□□□ -0.94
CLK3-208ENST00000562626 DIO3P55073 304 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 HSD17B7P56937 341 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 ZNF763Q0D2J5 394 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 RAPSNQ13702 412 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 PTGR1Q14914 329 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 MPEG1Q2M385 716 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 ZNF385BQ569K4 471 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 HSP90B2PQ58FF3 399 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 DCAF10Q5QP82 559 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 LARP4Q71RC2 724 aaKnown RBP eCLIP9.16□□□□□ -0.94
CLK3-208ENST00000562626 PAGE2Q7Z2X7 111 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 GPR155Q7Z3F1 870 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 PARP9Q8IXQ6 854 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 ZNF595Q8IYB9 648 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 KIF2BQ8N4N8 673 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 ZSCAN1Q8NBB4 408 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 SIMC1Q8NDZ2 872 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 NFAM1Q8NET5 270 aaPredicted RBP9.16□□□□□ -0.94
CLK3-208ENST00000562626 PIWIL2Q8TC59 973 aaKnown RBP9.16□□□□□ -0.94
CLK3-208ENST00000562626 GFM2Q969S9 779 aaKnown RBP9.16□□□□□ -0.94
CLK3-208ENST00000562626 PPWD1Q96BP3 646 aaKnown RBP9.16□□□□□ -0.94
CLK3-208ENST00000562626 TUBGCP3Q96CW5 907 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 CNRIP1Q96F85 164 aaPredicted RBP9.16□□□□□ -0.94
CLK3-208ENST00000562626 MARK4Q96L34 752 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 ZNF700Q9H0M5 742 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 NMRK1Q9NWW6 199 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 MMACHCQ9Y4U1 282 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 USH1CQ9Y6N9 552 aa9.16□□□□□ -0.94
CLK3-208ENST00000562626 HDAC3O15379 428 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 AKAP10O43572 662 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 MAN1A2O60476 641 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 EDF1O60869 148 aaKnown RBP9.15□□□□□ -0.94
CLK3-208ENST00000562626 GPR75O95800 540 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 HPP00738 406 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 IGHEP01854 428 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 PDGFAP04085 211 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 CLPSP04118 112 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 CT62P0C5K7 136 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 ITGAMP11215 1152 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 G6PDP11413 515 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 CD1EP15812 388 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 ALOX15P16050 662 aaPredicted RBP9.15□□□□□ -0.94
CLK3-208ENST00000562626 MDH1P40925 334 aaKnown RBP9.15□□□□□ -0.94
CLK3-208ENST00000562626 BUD31P41223 144 aaPredicted RBP9.15□□□□□ -0.94
CLK3-208ENST00000562626 ALDH9A1P49189 494 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 GPR143P51810 404 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 OR4D2P58180 307 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 C2orf80Q0P641 193 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 SF3A3Q12874 501 aaKnown RBP eCLIP9.15□□□□□ -0.94
CLK3-208ENST00000562626 IL23RQ5VWK5 629 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 TMEM198Q66K66 360 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 OR52E8Q6IFG1 317 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 SLC48A1Q6P1K1 146 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 PAPD4Q6PIY7 484 aaKnown RBP9.15□□□□□ -0.94
CLK3-208ENST00000562626 LIX1Q8N485 282 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 KRTCAP2Q8N6L1 136 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 EXD3Q8N9H8 876 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 RFWD2Q8NHY2 731 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 ADAMTS18Q8TE60 1221 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 PTPMT1Q8WUK0 201 aaPredicted RBP9.15□□□□□ -0.94
CLK3-208ENST00000562626 PSMF1Q92530 271 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 MAELQ96JY0 434 aaKnown RBP9.15□□□□□ -0.94
CLK3-208ENST00000562626 ZNF681Q96N22 645 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 NPAS2Q99743 824 aa9.15□□□□□ -0.94
CLK3-208ENST00000562626 ALOXE3Q9BYJ1 711 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms