RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 FIP1L1Q6UN15 594 aaKnown RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 RTL4Q6ZR62 310 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 MS4A15Q8N5U1 240 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 KREMEN2Q8NCW0 462 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.7□□□□□ -0.38
CLK3-206ENST00000562078 SLC13A3Q8WWT9 602 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 ZC3HAV1LQ96H79 300 aaKnown RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 CRELD1Q96HD1 420 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 CDK15Q96Q40 435 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 TAPBPLQ9BX59 468 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 ADGRE3Q9BY15 652 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 OR51B5Q9H339 312 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 BPIFA1Q9NP55 256 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 B3GAT2Q9NPZ5 323 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 FKBPLQ9UIM3 349 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 FAM50BQ9Y247 325 aa12.7□□□□□ -0.38
CLK3-206ENST00000562078 POLR3HQ9Y535 204 aaPredicted RBP12.7□□□□□ -0.38
CLK3-206ENST00000562078 ANKRD66B4E2M5 251 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 LGALS8O00214 317 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 GREM1O60565 184 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 LPOP22079 712 aaPredicted RBP12.69□□□□□ -0.38
CLK3-206ENST00000562078 LHCGRP22888 699 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 GABRR2P28476 465 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 SUOXP51687 545 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 AGFG1P52594 562 aaKnown RBP12.69□□□□□ -0.38
CLK3-206ENST00000562078 SNAPC1Q16533 368 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 MZT2BQ6NZ67 158 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 ZNF704Q6ZNC4 412 aaPredicted RBP12.69□□□□□ -0.38
CLK3-206ENST00000562078 VTCN1Q7Z7D3 282 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 STPG2Q8N412 459 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 ZNF655Q8N720 491 aaPredicted RBP12.69□□□□□ -0.38
CLK3-206ENST00000562078 MRPL43Q8N983 215 aaKnown RBP12.69□□□□□ -0.38
CLK3-206ENST00000562078 SRFBP1Q8NEF9 429 aaKnown RBP12.69□□□□□ -0.38
CLK3-206ENST00000562078 B3GNT7Q8NFL0 401 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 CREB3L4Q8TEY5 395 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 MYO19Q96H55 970 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 IER2Q9BTL4 223 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 TTYH1Q9H313 450 aaPredicted RBP12.69□□□□□ -0.38
CLK3-206ENST00000562078 HHATLQ9HCP6 504 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 THUMPD1Q9NXG2 353 aaKnown RBP12.69□□□□□ -0.38
CLK3-206ENST00000562078 MS4A12Q9NXJ0 267 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 IRAK3Q9Y616 596 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 CFAP20Q9Y6A4 193 aaKnown RBP12.69□□□□□ -0.38
CLK3-206ENST00000562078 E9PQ18 207 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 OR1I1O60431 355 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 PSIP1O75475 530 aaKnown RBP12.69□□□□□ -0.38
CLK3-206ENST00000562078 RHOBTB1O94844 696 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 CDRT1O95170 752 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 CKMP06732 381 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 PRKAR1AP10644 381 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 HOXB8P17481 243 aaPredicted RBP12.69□□□□□ -0.38
CLK3-206ENST00000562078 HNRNPA0Q13151 305 aaKnown RBP12.69□□□□□ -0.38
CLK3-206ENST00000562078 PTGR1Q14914 329 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 FAM174BQ3ZCQ3 159 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 MLIPQ5VWP3 458 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 PSAPL1Q6NUJ1 521 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 ADGRD2Q7Z7M1 963 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 ZNF605Q86T29 641 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 PIANPQ8IYJ0 282 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 Q8N402 240 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 OR11H7Q8NGC8 314 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 OR6K2Q8NGY2 324 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 WDR36Q8NI36 951 aaKnown RBP12.69□□□□□ -0.38
CLK3-206ENST00000562078 SLC5A11Q8WWX8 675 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 PDXPQ96GD0 296 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 ATOH8Q96SQ7 321 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 GSX2Q9BZM3 304 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 TM6SF2Q9BZW4 377 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 ZNF226Q9NYT6 803 aa12.69□□□□□ -0.38
CLK3-206ENST00000562078 K7ERQ8 282 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 GRM6O15303 877 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 NDUFS3O75489 264 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 LATS1O95835 1130 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 GLAP06280 429 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 UROSP10746 265 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 MC4RP32245 332 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 GGT2P36268 569 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 NNMTP40261 264 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 HOXA1P49639 335 aaPredicted RBP12.68□□□□□ -0.38
CLK3-206ENST00000562078 RPL6Q02878 288 aaKnown RBP12.68□□□□□ -0.38
CLK3-206ENST00000562078 PUDPQ08623 228 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 KIAA0040Q15053 153 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 LTB4RQ15722 352 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 ETFDHQ16134 617 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 RBBP7Q16576 425 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 MAPKAPK3Q16644 382 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 KLHL22Q53GT1 634 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 RUNDC3AQ59EK9 446 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 FAHD1Q6P587 224 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 LILRA6Q6PI73 481 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 NCEH1Q6PIU2 408 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 ATRAIDQ6UW56 229 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 ZNF783Q6ZMS7 281 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 Q6ZNB5 142 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 GAREM2Q75VX8 874 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 EIF3MQ7L2H7 374 aaKnown RBP12.68□□□□□ -0.38
CLK3-206ENST00000562078 KIAA0907Q7Z7F0 614 aaPredicted RBP12.68□□□□□ -0.38
CLK3-206ENST00000562078 YIPF5Q969M3 257 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 RBCK1Q9BYM8 510 aa12.68□□□□□ -0.38
CLK3-206ENST00000562078 C1orf109Q9NX04 203 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms