RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 EFCAB1Q9HAE3 211 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 ANKHQ9HCJ1 492 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 SIRT5Q9NXA8 310 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 CCDC167Q9P0B6 97 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 MCM8Q9UJA3 840 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 PSME2Q9UL46 239 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 TCFL5Q9UL49 500 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 CCL27Q9Y4X3 112 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 MED13Q9UHV7 2174 aa11.13□□□□□ -0.63
LDLR-212ENST00000560467 LOC100653049A0A140TA62 436 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 FAM234BA2RU67 622 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 CCDC154A6NI56 674 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 CTSVO60911 334 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 OR2B3O76000 313 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 KRT34O76011 436 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 LDLRP01130 860 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 KLK3P07288 261 aaPredicted RBP11.12□□□□□ -0.63
LDLR-212ENST00000560467 RAB40ALP0C0E4 278 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 PIK3R1P27986 724 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 RORAP35398 523 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 AVPR1BP47901 424 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 DIO3P55073 304 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 MTTPP55157 894 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 NME5P56597 212 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 CLDN8P56748 225 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 TRA2BP62995 288 aaKnown RBP11.12□□□□□ -0.63
LDLR-212ENST00000560467 BTN3A2P78410 334 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 SRSF11Q05519 484 aaKnown RBP11.12□□□□□ -0.63
LDLR-212ENST00000560467 ZNF763Q0D2J5 394 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 TBL3Q12788 808 aaKnown RBP11.12□□□□□ -0.63
LDLR-212ENST00000560467 DPY19L1Q2PZI1 675 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 WASHC2DQ5SRD0 308 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 YOD1Q5VVQ6 348 aaPredicted RBP11.12□□□□□ -0.63
LDLR-212ENST00000560467 GARNL3Q5VVW2 1013 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 TLDC1Q6P9B6 456 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 DNAJC22Q8N4W6 341 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 NATD1Q8N6N6 113 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 OR8K5Q8NH50 307 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 OR1L3Q8NH93 324 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 CREB3L4Q8TEY5 395 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 MS4A6EQ96DS6 147 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 CLIP3Q96DZ5 547 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 MARK4Q96L34 752 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 LRFN5Q96NI6 719 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 NDC1Q9BTX1 674 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 CCDC106Q9BWC9 280 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 BRINP2Q9C0B6 783 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 RMND5AQ9H871 391 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 MIEF1Q9NQG6 463 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 GID8Q9NWU2 228 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 MS4A12Q9NXJ0 267 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 GPR83Q9NYM4 423 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 GIMAP2Q9UG22 337 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 CDC14AQ9UNH5 594 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 NDUFAF1Q9Y375 327 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 PCDHGB7Q9Y5F8 929 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 GPR45Q9Y5Y3 372 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 CSMD1Q96PZ7 3565 aa11.12□□□□□ -0.63
LDLR-212ENST00000560467 LRBAP50851 2863 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 HYKKA2RU49 373 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 WIPF3A6NGB9 483 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 BBIP1A8MTZ0 92 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 TMEM150CB9EJG8 249 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 NR5A2O00482 541 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 CFLARO15519 480 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 COX7A2P14406 83 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 ALOX12P18054 663 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 GPX3P22352 226 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 HIST1H1TP22492 207 aaPredicted RBP11.11□□□□□ -0.63
LDLR-212ENST00000560467 JAK1P23458 1154 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 S100A3P33764 101 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 MRPL19P49406 292 aaKnown RBP11.11□□□□□ -0.63
LDLR-212ENST00000560467 POLR2JP52435 117 aaKnown RBP11.11□□□□□ -0.63
LDLR-212ENST00000560467 ARSFP54793 590 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 EMP3P54852 163 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 RAB8AP61006 207 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 C2orf80Q0P641 193 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 LRRC74AQ0VAA2 488 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 SLAMF1Q13291 335 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 KIAA0040Q15053 153 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 NCF4Q15080 339 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 MUM1Q2TAK8 710 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 PGS1Q32NB8 556 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 PLEKHN1Q494U1 663 aaPredicted RBP11.11□□□□□ -0.63
LDLR-212ENST00000560467 CPTPQ5TA50 214 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 ABHD17CQ6PCB6 329 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 C6orf89Q6UWU4 347 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 VN1R5Q7Z5H4 357 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 RNF175Q8N4F7 328 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 CISD2Q8N5K1 135 aaKnown RBP11.11□□□□□ -0.63
LDLR-212ENST00000560467 SNRNP40Q96DI7 357 aaKnown RBP11.11□□□□□ -0.63
LDLR-212ENST00000560467 TM4SF19Q96DZ7 209 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 MTERF3Q96E29 417 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 TSSK3Q96PN8 268 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 SERINC2Q96SA4 455 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 SMAD5Q99717 465 aaKnown RBP11.11□□□□□ -0.63
LDLR-212ENST00000560467 EBPLQ9BY08 206 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 SLC6A16Q9GZN6 736 aa11.11□□□□□ -0.63
LDLR-212ENST00000560467 DDX31Q9H8H2 851 aaKnown RBP11.11□□□□□ -0.63
LDLR-212ENST00000560467 ACTR5Q9H9F9 607 aaPredicted RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms