RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 THAP4Q8WY91 577 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 NACC2Q96BF6 587 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 MAELQ96JY0 434 aaKnown RBP20.41■□□□□ 0.86
SNX1-210ENST00000560260 TSSK3Q96PN8 268 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 ZNF700Q9H0M5 742 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 PFDN4Q9NQP4 134 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 MAN2B2Q9Y2E5 1009 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 EPG5Q9HCE0 2579 aa20.41■□□□□ 0.86
SNX1-210ENST00000560260 C1orf226A1L170 272 aa20.4■□□□□ 0.86
SNX1-210ENST00000560260 SEC24DO94855 1032 aaPredicted RBP20.4■□□□□ 0.86
SNX1-210ENST00000560260 GYS2P54840 703 aa20.4■□□□□ 0.86
SNX1-210ENST00000560260 ZNF750Q32MQ0 723 aa20.4■□□□□ 0.86
SNX1-210ENST00000560260 IL23RQ5VWK5 629 aa20.4■□□□□ 0.86
SNX1-210ENST00000560260 SLC48A1Q6P1K1 146 aa20.4■□□□□ 0.86
SNX1-210ENST00000560260 TANKQ92844 425 aa20.4■□□□□ 0.86
SNX1-210ENST00000560260 OR52B2Q96RD2 323 aa20.4■□□□□ 0.86
SNX1-210ENST00000560260 WDR41Q9HAD4 459 aa20.4■□□□□ 0.86
SNX1-210ENST00000560260 FAM53CQ9NYF3 392 aa20.4■□□□□ 0.86
SNX1-210ENST00000560260 BAIAP2L1Q9UHR4 511 aa20.4■□□□□ 0.86
SNX1-210ENST00000560260 TRPC5OSA6NMA1 111 aa20.39■□□□□ 0.85
SNX1-210ENST00000560260 PCDH17O14917 1159 aa20.39■□□□□ 0.85
SNX1-210ENST00000560260 GUCY1B2O75343 617 aa20.39■□□□□ 0.85
SNX1-210ENST00000560260 ALDH9A1P49189 494 aa20.39■□□□□ 0.85
SNX1-210ENST00000560260 OR4D2P58180 307 aa20.39■□□□□ 0.85
SNX1-210ENST00000560260 EMX2Q04743 252 aa20.39■□□□□ 0.85
SNX1-210ENST00000560260 DUSP2Q05923 314 aa20.39■□□□□ 0.85
SNX1-210ENST00000560260 Q0VFX4 171 aa20.39■□□□□ 0.85
SNX1-210ENST00000560260 FAM180BQ6P0A1 224 aa20.39■□□□□ 0.85
SNX1-210ENST00000560260 PAPD4Q6PIY7 484 aaKnown RBP20.39■□□□□ 0.85
SNX1-210ENST00000560260 DGAT2L6Q6ZPD8 337 aa20.39■□□□□ 0.85
SNX1-210ENST00000560260 LIX1Q8N485 282 aa20.39■□□□□ 0.85
SNX1-210ENST00000560260 THOC1Q96FV9 657 aaKnown RBP20.39■□□□□ 0.85
SNX1-210ENST00000560260 IP6K3Q96PC2 410 aa20.39■□□□□ 0.85
SNX1-210ENST00000560260 FAIM2Q9BWQ8 316 aa20.39■□□□□ 0.85
SNX1-210ENST00000560260 ALOXE3Q9BYJ1 711 aa20.39■□□□□ 0.85
SNX1-210ENST00000560260 TRIM55Q9BYV6 548 aa20.39■□□□□ 0.85
SNX1-210ENST00000560260 ZNF160Q9HCG1 818 aa20.39■□□□□ 0.85
SNX1-210ENST00000560260 ASIC5Q9NY37 505 aa20.39■□□□□ 0.85
SNX1-210ENST00000560260 C19orf25Q9UFG5 118 aaPredicted RBP20.39■□□□□ 0.85
SNX1-210ENST00000560260 KCNMB2Q9Y691 235 aa20.39■□□□□ 0.85
SNX1-210ENST00000560260 A8MUA0 341 aa20.38■□□□□ 0.85
SNX1-210ENST00000560260 PEX12O00623 359 aa20.38■□□□□ 0.85
SNX1-210ENST00000560260 GPR75O95800 540 aa20.38■□□□□ 0.85
SNX1-210ENST00000560260 CELA2AP08217 269 aa20.38■□□□□ 0.85
SNX1-210ENST00000560260 ALDOCP09972 364 aaKnown RBP20.38■□□□□ 0.85
SNX1-210ENST00000560260 GSTM5P46439 218 aa20.38■□□□□ 0.85
SNX1-210ENST00000560260 DIO3P55073 304 aa20.38■□□□□ 0.85
SNX1-210ENST00000560260 ERVK-8P63133 956 aa20.38■□□□□ 0.85
SNX1-210ENST00000560260 C2orf80Q0P641 193 aa20.38■□□□□ 0.85
SNX1-210ENST00000560260 PTGR1Q14914 329 aa20.38■□□□□ 0.85
SNX1-210ENST00000560260 SMU1Q2TAY7 513 aa20.38■□□□□ 0.85
SNX1-210ENST00000560260 DCAF10Q5QP82 559 aa20.38■□□□□ 0.85
SNX1-210ENST00000560260 OGFOD2Q6N063 350 aa20.38■□□□□ 0.85
SNX1-210ENST00000560260 CGB2Q6NT52 195 aa20.38■□□□□ 0.85
SNX1-210ENST00000560260 EPGNQ6UW88 154 aa20.38■□□□□ 0.85
SNX1-210ENST00000560260 TMEM132CQ8N3T6 1108 aa20.38■□□□□ 0.85
SNX1-210ENST00000560260 GFM2Q969S9 779 aaKnown RBP20.38■□□□□ 0.85
SNX1-210ENST00000560260 IMMP1LQ96LU5 166 aa20.38■□□□□ 0.85
SNX1-210ENST00000560260 CATSPER2Q96P56 530 aa20.38■□□□□ 0.85
SNX1-210ENST00000560260 MED13Q9UHV7 2174 aa20.38■□□□□ 0.85
SNX1-210ENST00000560260 VPS4BO75351 444 aa20.37■□□□□ 0.85
SNX1-210ENST00000560260 DNAJB5O75953 348 aa20.37■□□□□ 0.85
SNX1-210ENST00000560260 LRATO95237 230 aa20.37■□□□□ 0.85
SNX1-210ENST00000560260 HPP00738 406 aa20.37■□□□□ 0.85
SNX1-210ENST00000560260 G6PDP11413 515 aa20.37■□□□□ 0.85
SNX1-210ENST00000560260 DRD2P14416 443 aa20.37■□□□□ 0.85
SNX1-210ENST00000560260 LBPP18428 481 aa20.37■□□□□ 0.85
SNX1-210ENST00000560260 DDCP20711 480 aa20.37■□□□□ 0.85
SNX1-210ENST00000560260 STX4Q12846 297 aa20.37■□□□□ 0.85
SNX1-210ENST00000560260 TBR1Q16650 682 aa20.37■□□□□ 0.85
SNX1-210ENST00000560260 IKBIPQ70UQ0 350 aa20.37■□□□□ 0.85
SNX1-210ENST00000560260 NDUFAF7Q7L592 441 aa20.37■□□□□ 0.85
SNX1-210ENST00000560260 RFWD2Q8NHY2 731 aa20.37■□□□□ 0.85
SNX1-210ENST00000560260 NUDT8Q8WV74 236 aa20.37■□□□□ 0.85
SNX1-210ENST00000560260 KLHL29Q96CT2 875 aa20.37■□□□□ 0.85
SNX1-210ENST00000560260 EBF4Q9BQW3 602 aa20.37■□□□□ 0.85
SNX1-210ENST00000560260 PNO1Q9NRX1 252 aaKnown RBP20.37■□□□□ 0.85
SNX1-210ENST00000560260 FGFR1OP2Q9NVK5 253 aa20.37■□□□□ 0.85
SNX1-210ENST00000560260 NSG1A0A0A6YYJ2 146 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 SAGE2PA6NJ88 616 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 AKAP10O43572 662 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 DIAPH2O60879 1101 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 MAPK1P28482 360 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 IDH3AP50213 366 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 AQP5P55064 265 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 SERTAD2Q14140 314 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 HEPACAMQ14CZ8 416 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 ZNF385BQ569K4 471 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 TMEM198Q66K66 360 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 ANKRD26P1Q6NSI1 321 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 GPR155Q7Z3F1 870 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 TICAM1Q8IUC6 712 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 LRRC34Q8IZ02 419 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 NFAM1Q8NET5 270 aaPredicted RBP20.36■□□□□ 0.85
SNX1-210ENST00000560260 ACTRT2Q8TDY3 377 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 DOK4Q8TEW6 326 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 EXTL1Q92935 676 aa20.36■□□□□ 0.85
SNX1-210ENST00000560260 EXOSC8Q96B26 276 aaKnown RBP20.36■□□□□ 0.85
SNX1-210ENST00000560260 PPWD1Q96BP3 646 aaKnown RBP20.36■□□□□ 0.85
SNX1-210ENST00000560260 CNRIP1Q96F85 164 aaPredicted RBP20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms