RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 DTWD1Q8N5C7 304 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 OR8J3Q8NGG0 315 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 OR4A15Q8NGL6 344 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 PHF12Q96QT6 1004 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 CSF3RQ99062 836 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 SLC35C2Q9NQQ7 365 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 CUTCQ9NTM9 273 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 NDUFA13Q9P0J0 144 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 CD300AQ9UGN4 299 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 PCDHGB4Q9UN71 923 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 GMEB1Q9Y692 573 aa10.6□□□□□ -0.71
USP3-218ENST00000560202 COL5A1P20908 1838 aaPredicted RBP10.59□□□□□ -0.71
USP3-218ENST00000560202 ASXL3Q9C0F0 2248 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 RP1P56715 2156 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 PRORSD1PA6NEY8 169 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 CYR61O00622 381 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 CHST10O43529 356 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 ERAL1O75616 437 aaKnown RBP10.59□□□□□ -0.71
USP3-218ENST00000560202 CIB2O75838 187 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 ABCB1P08183 1280 aaPredicted RBP10.59□□□□□ -0.71
USP3-218ENST00000560202 ME2P23368 584 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 FRKP42685 505 aaPredicted RBP10.59□□□□□ -0.71
USP3-218ENST00000560202 GCGRP47871 477 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 AVPR1BP47901 424 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 CLCN2P51788 898 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 RAB38P57729 211 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 MTPNP58546 118 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 HBA1P69905 142 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 ZFP36L1Q07352 338 aaKnown RBP10.59□□□□□ -0.71
USP3-218ENST00000560202 TRA2AQ13595 282 aaKnown RBP eCLIP10.59□□□□□ -0.71
USP3-218ENST00000560202 SELPLGQ14242 412 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 GOT1L1Q8NHS2 421 aaPredicted RBP10.59□□□□□ -0.71
USP3-218ENST00000560202 OR5P2Q8WZ92 322 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 CCDC124Q96CT7 223 aaKnown RBP10.59□□□□□ -0.71
USP3-218ENST00000560202 CDC6Q99741 560 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 SH3GL1Q99961 368 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 NDC1Q9BTX1 674 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 RPF2Q9H7B2 306 aaKnown RBP10.59□□□□□ -0.71
USP3-218ENST00000560202 CLK4Q9HAZ1 481 aaKnown RBP10.59□□□□□ -0.71
USP3-218ENST00000560202 SLAMF7Q9NQ25 335 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 PRDM9Q9NQV7 894 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 TAS2R9Q9NYW1 312 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 NKX1-2Q9UD57 310 aaPredicted RBP10.59□□□□□ -0.71
USP3-218ENST00000560202 PSME2Q9UL46 239 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 VPS4AQ9UN37 437 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 CLCA2Q9UQC9 943 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 COMMD3-BMI1R4GMX3 469 aa10.59□□□□□ -0.71
USP3-218ENST00000560202 H0YIG0 161 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 AGRPO00253 132 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 ZNF749O43361 778 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 ZCCHC18P0CG32 403 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 TCN1P20061 433 aaPredicted RBP10.58□□□□□ -0.72
USP3-218ENST00000560202 MSX2P35548 267 aaPredicted RBP10.58□□□□□ -0.72
USP3-218ENST00000560202 ARSFP54793 590 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 MANFP55145 182 aaKnown RBP10.58□□□□□ -0.72
USP3-218ENST00000560202 EEFSECP57772 596 aaKnown RBP10.58□□□□□ -0.72
USP3-218ENST00000560202 SIM1P81133 766 aaPredicted RBP10.58□□□□□ -0.72
USP3-218ENST00000560202 SHC2P98077 582 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 SLC34A1Q06495 639 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 SPATS1Q496A3 300 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 PRAMEF17Q5VTA0 474 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 C1orf146Q5VVC0 180 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 YOD1Q5VVQ6 348 aaPredicted RBP10.58□□□□□ -0.72
USP3-218ENST00000560202 TTLL10Q6ZVT0 673 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 NET1Q7Z628 596 aaPredicted RBP10.58□□□□□ -0.72
USP3-218ENST00000560202 B3GNT8Q7Z7M8 397 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 SHISA5Q8N114 240 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 FAM156AQ8NDB6 213 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 MVB12AQ96EY5 273 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 MMABQ96EY8 250 aaPredicted RBP10.58□□□□□ -0.72
USP3-218ENST00000560202 CNRIP1Q96F85 164 aaPredicted RBP10.58□□□□□ -0.72
USP3-218ENST00000560202 ZBED6CLQ96FA7 236 aaPredicted RBP10.58□□□□□ -0.72
USP3-218ENST00000560202 AURKBQ96GD4 344 aaPredicted RBP10.58□□□□□ -0.72
USP3-218ENST00000560202 OR6C1Q96RD1 312 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 BBS4Q96RK4 519 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 CPPED1Q9BRF8 314 aaPredicted RBP10.58□□□□□ -0.72
USP3-218ENST00000560202 THUMPD3Q9BV44 507 aaKnown RBP10.58□□□□□ -0.72
USP3-218ENST00000560202 IKZF5Q9H5V7 419 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 DENND2DQ9H6A0 471 aaPredicted RBP10.58□□□□□ -0.72
USP3-218ENST00000560202 ACSS1Q9NUB1 689 aaPredicted RBP10.58□□□□□ -0.72
USP3-218ENST00000560202 GIMAP4Q9NUV9 329 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 SIDT1Q9NXL6 827 aaKnown RBP10.58□□□□□ -0.72
USP3-218ENST00000560202 HCN3Q9P1Z3 774 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 ZNF282Q9UDV7 671 aaPredicted RBP10.58□□□□□ -0.72
USP3-218ENST00000560202 ENTPD4Q9Y227 616 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 POMPQ9Y244 141 aa10.58□□□□□ -0.72
USP3-218ENST00000560202 MYO1GB0I1T2 1018 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 FAM227AF5H4B4 570 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 CLIC1O00299 241 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 GDF9O60383 454 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 FOXD2O60548 495 aaPredicted RBP10.57□□□□□ -0.72
USP3-218ENST00000560202 HSD17B1P14061 328 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 CSNK2A2P19784 350 aaPredicted RBP10.57□□□□□ -0.72
USP3-218ENST00000560202 ALAS2P22557 587 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 NTSP30990 170 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 CSTF2P33240 577 aaKnown RBP eCLIP10.57□□□□□ -0.72
USP3-218ENST00000560202 MAT1AQ00266 395 aaKnown RBP10.57□□□□□ -0.72
USP3-218ENST00000560202 LIPEQ05469 1076 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 ILKQ13418 452 aa10.57□□□□□ -0.72
USP3-218ENST00000560202 C16orf72Q14CZ0 275 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms