RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 STK40Q8N2I9 435 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 CIARTQ8N365 385 aaPredicted RBP5.36□□□□□ -1.55
RTF1-204ENST00000558117 TTC39CQ8N584 583 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 RFLNBQ8N5W9 214 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 AVL9Q8NBF6 648 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 CALML4Q96GE6 196 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 TMEM19Q96HH6 336 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 PCED1BQ96HM7 432 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 TMEM68Q96MH6 324 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 PKP4Q99569 1192 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 CTRCQ99895 268 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 SYT15Q9BQS2 421 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 GPATCH1Q9BRR8 931 aaKnown RBP5.36□□□□□ -1.55
RTF1-204ENST00000558117 PCGF1Q9BSM1 259 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 KRTAP2-2Q9BYT5 123 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 PCDH9Q9HC56 1237 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 RANGRFQ9HD47 186 aaPredicted RBP5.36□□□□□ -1.55
RTF1-204ENST00000558117 PDE7BQ9NP56 450 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 ACSS1Q9NUB1 689 aaPredicted RBP5.36□□□□□ -1.55
RTF1-204ENST00000558117 GGA2Q9UJY4 613 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 DDX19BQ9UMR2 479 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 PLEKHA6Q9Y2H5 1048 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 TENM1Q9UKZ4 2725 aa5.36□□□□□ -1.55
RTF1-204ENST00000558117 CHD3Q12873 2000 aaKnown RBP5.35□□□□□ -1.55
RTF1-204ENST00000558117 TCHHQ07283 1943 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 IGHV4OR15-8A0A075B7B6 117 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 CCDC169A6NNP5 214 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 PRAC2D3DTV9 90 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 PTGES3LE9PB15 166 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 CCL21O00585 134 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 RAD51BO15315 384 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 CLDN3O15551 220 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 HUS1O60921 280 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 IL1BP01584 269 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 F7P08709 466 aaPredicted RBP5.35□□□□□ -1.55
RTF1-204ENST00000558117 DNASE1P24855 282 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 ATP5C1P36542 298 aaKnown RBP5.35□□□□□ -1.55
RTF1-204ENST00000558117 HADHAP40939 763 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 LHX1P48742 406 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 CLCNKAP51800 687 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 CNTN1Q12860 1018 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 ILF3Q12906 894 aaKnown RBP eCLIP5.35□□□□□ -1.55
RTF1-204ENST00000558117 ZBTB17Q13105 803 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 NEK5Q6P3R8 708 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 TUBA1AQ71U36 451 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 SLC47A2Q86VL8 602 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 HORMAD1Q86X24 394 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 CD302Q8IX05 232 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 LMNTD2Q8IXW0 634 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 PCDH20Q8N6Y1 951 aaKnown RBP5.35□□□□□ -1.55
RTF1-204ENST00000558117 POC1AQ8NBT0 407 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 KCTD6Q8NC69 237 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 GOT1L1Q8NHS2 421 aaPredicted RBP5.35□□□□□ -1.55
RTF1-204ENST00000558117 MAGEC3Q8TD91 643 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 GRHL3Q8TE85 626 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 DDI1Q8WTU0 396 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 SLC20A1Q8WUM9 679 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 FIG4Q92562 907 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 KIFAP3Q92845 792 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 ORAI1Q96D31 301 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 RRNAD1Q96FB5 475 aaKnown RBP5.35□□□□□ -1.55
RTF1-204ENST00000558117 EPYCQ99645 322 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 SLX1AQ9BQ83 275 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 TUBA1CQ9BQE3 449 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 XPO4Q9C0E2 1151 aaKnown RBP5.35□□□□□ -1.55
RTF1-204ENST00000558117 ILKAPQ9H0C8 392 aaPredicted RBP5.35□□□□□ -1.55
RTF1-204ENST00000558117 MUC13Q9H3R2 512 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 GRPEL1Q9HAV7 217 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 OSER1Q9NX31 292 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 DPP3Q9NY33 737 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 C5AR2Q9P296 337 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 CDH9Q9ULB4 789 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 ZNF510Q9Y2H8 683 aa5.35□□□□□ -1.55
RTF1-204ENST00000558117 HRNRQ86YZ3 2850 aaPredicted RBP5.35□□□□□ -1.55
RTF1-204ENST00000558117 EDDM13A0A1B0GTR0 161 aa5.34□□□□□ -1.55
RTF1-204ENST00000558117 TBCAO75347 108 aaKnown RBP5.34□□□□□ -1.55
RTF1-204ENST00000558117 TGDSO95455 350 aa5.34□□□□□ -1.55
RTF1-204ENST00000558117 IGKV3-20P01619 116 aa5.34□□□□□ -1.55
RTF1-204ENST00000558117 EIF2S1P05198 315 aaKnown RBP5.34□□□□□ -1.55
RTF1-204ENST00000558117 THRAP10827 490 aa5.34□□□□□ -1.55
RTF1-204ENST00000558117 AMD1P17707 334 aa5.34□□□□□ -1.55
RTF1-204ENST00000558117 POLR2EP19388 210 aaKnown RBP5.34□□□□□ -1.55
RTF1-204ENST00000558117 S1PR1P21453 382 aa5.34□□□□□ -1.55
RTF1-204ENST00000558117 MT3P25713 68 aa5.34□□□□□ -1.55
RTF1-204ENST00000558117 CORO1AP31146 461 aaKnown RBP5.34□□□□□ -1.55
RTF1-204ENST00000558117 CD70P32970 193 aa5.34□□□□□ -1.55
RTF1-204ENST00000558117 PEX3P56589 373 aa5.34□□□□□ -1.55
RTF1-204ENST00000558117 KCNK10P57789 538 aa5.34□□□□□ -1.55
RTF1-204ENST00000558117 CSNK2A1P68400 391 aaPredicted RBP5.34□□□□□ -1.55
RTF1-204ENST00000558117 CLPPQ16740 277 aaPredicted RBP5.34□□□□□ -1.55
RTF1-204ENST00000558117 DNAJC21Q5F1R6 531 aaKnown RBP5.34□□□□□ -1.55
RTF1-204ENST00000558117 GPR139Q6DWJ6 353 aa5.34□□□□□ -1.55
RTF1-204ENST00000558117 IGFL3Q6UXB1 125 aa5.34□□□□□ -1.55
RTF1-204ENST00000558117 CEACAM20Q6UY09 585 aa5.34□□□□□ -1.55
RTF1-204ENST00000558117 Q6ZS92 163 aa5.34□□□□□ -1.55
RTF1-204ENST00000558117 NCCRP1Q6ZVX7 275 aaPredicted RBP5.34□□□□□ -1.55
RTF1-204ENST00000558117 HSCBQ8IWL3 235 aa5.34□□□□□ -1.55
RTF1-204ENST00000558117 SYT2Q8N9I0 419 aaPredicted RBP5.34□□□□□ -1.55
RTF1-204ENST00000558117 CSNK2A3Q8NEV1 391 aa5.34□□□□□ -1.55
RTF1-204ENST00000558117 WFDC5Q8TCV5 224 aa5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms