RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	ZNF703	Q9H7S9	590 aa	Predicted RBP	11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	LYRM4	Q9HD34	91 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	NEUROD4	Q9HD90	331 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	PRDM7	Q9NQW5	492 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	QPCTL	Q9NXS2	382 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	OARD1	Q9Y530	152 aa		11.66	□□□□□ -0.54
SHMT2-223	ENST00000556689	DYRK3	O43781	588 aa		11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	TBX6	O95947	436 aa	Predicted RBP	11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	COX7A2	P14406	83 aa		11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	TRPC1	P48995	793 aa		11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	RNASEH2B	Q5TBB1	312 aa	Known RBP	11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	TMEM198	Q66K66	360 aa		11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	ADGRD1	Q6QNK2	874 aa		11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	CHSY3	Q70JA7	882 aa		11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	LRRC25	Q8N386	305 aa	Predicted RBP	11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	NAXE	Q8NCW5	288 aa		11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	NUBPL	Q8TB37	319 aa		11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	RHBDF1	Q96CC6	855 aa		11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	JSRP1	Q96MG2	331 aa	Predicted RBP	11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	F2RL3	Q96RI0	385 aa		11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	SLC6A15	Q9H2J7	730 aa		11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	EPB41L4B	Q9H329	900 aa		11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	PLEKHF2	Q9H8W4	249 aa		11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	PROK2	Q9HC23	129 aa		11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	GPRC5B	Q9NZH0	403 aa		11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	CNIH4	Q9P003	139 aa		11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	SLC17A6	Q9P2U8	582 aa		11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	SPACA6	W5XKT8	324 aa		11.65	□□□□□ -0.54
SHMT2-223	ENST00000556689	NPEPPSL1	A6NEC2	478 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	FAM171A2	A8MVW0	826 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	CLGN	O14967	610 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	BANF1	O75531	89 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	ZNF37A	P17032	561 aa	Predicted RBP	11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	SERPINB3	P29508	390 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	SLC6A12	P48065	614 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	KCNC1	P48547	511 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	ID2	Q02363	134 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	CKAP4	Q07065	602 aa	Known RBP	11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	SF3B4	Q15427	424 aa	Known RBP eCLIP	11.64	□□□□□ -0.55	5e-8	■■■■■ 52.3
SHMT2-223	ENST00000556689	CYP1B1	Q16678	543 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	C18orf21	Q32NC0	220 aa	Predicted RBP	11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	ACSF3	Q4G176	576 aa	Predicted RBP	11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	MSS51	Q4VC12	460 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	PRAMEF20	Q5VT98	475 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	SHE	Q5VZ18	495 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	POMZP3	Q6PJE2	187 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	FRA10AC1	Q70Z53	315 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	VN1R5	Q7Z5H4	357 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	LACC1	Q8IV20	430 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	IGDCC3	Q8IVU1	814 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	DND1	Q8IYX4	353 aa	Known RBP	11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	SRFBP1	Q8NEF9	429 aa	Known RBP	11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	LINC01560	Q8TB33	94 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	GRK7	Q8WTQ7	553 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	ANKRD9	Q96BM1	317 aa	Predicted RBP	11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	SPACA9	Q96E40	222 aa	Predicted RBP	11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	MS4A14	Q96JA4	679 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	DGAT2	Q96PD7	388 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	KCNC2	Q96PR1	638 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	TIMP4	Q99727	224 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	ROGDI	Q9GZN7	287 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	CTNNAL1	Q9UBT7	734 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	ZNF490	Q9ULM2	529 aa	Predicted RBP	11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	SAR1B	Q9Y6B6	198 aa		11.64	□□□□□ -0.55
SHMT2-223	ENST00000556689	C15orf38-AP3S2	A0A0A6YYH1	394 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	GOLGA6L10	A0A0M3HER8	536 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	LRRC3C	A6NJW4	275 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	GOSR1	O95249	250 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	C1QA	P02745	245 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	ATP5A1	P25705	553 aa	Known RBP	11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	PAFAH1B1	P43034	410 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	MSH2	P43246	934 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	STT3A	P46977	705 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	ZNF136	P52737	540 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	WNT3	P56703	355 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	DCAF7	P61962	342 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	NKX6-1	P78426	367 aa	Predicted RBP	11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	DUSP8	Q13202	625 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	BIK	Q13323	160 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	TSN	Q15631	228 aa	Known RBP	11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	LYPD8	Q6UX82	237 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	ADAMTSL2	Q86TH1	951 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	C9orf40	Q8IXQ3	194 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	PM20D2	Q8IYS1	436 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	RASGEF1C	Q8N431	466 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	ACOT4	Q8N9L9	421 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	FAM13C	Q8NE31	585 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	ARSG	Q96EG1	525 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	HSPBAP1	Q96EW2	488 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	RBM18	Q96H35	190 aa	Known RBP	11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	PBK	Q96KB5	322 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	MAPKAP1	Q9BPZ7	522 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	YIPF4	Q9BSR8	244 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	TBCD	Q9BTW9	1192 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	DOHH	Q9BU89	302 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	EHD1	Q9H4M9	534 aa		11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	ZNF395	Q9H8N7	513 aa	Predicted RBP	11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	RYDEN	Q9NUL5	291 aa	Known RBP	11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	BEX4	Q9NWD9	120 aa	Predicted RBP	11.63	□□□□□ -0.55
SHMT2-223	ENST00000556689	SNX12	Q9UMY4	172 aa		11.63	□□□□□ -0.55

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